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Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-let-7-5p (MIMAT0000001)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
6R55.26R55.26R55.2323 XForwardView as cDNA map |
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Ensembl
AC8.10AC8.10AC8.10223 XReverseView as cDNA map |
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Ensembl
AC8.12AC8.12AC8.12123 XForwardView as cDNA map |
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Ensembl
AC8.3AC8.3AC8.3223 XReverseView as cDNA map |
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Ensembl
AC8.7AC8.7AC8.7123 XForwardView as cDNA map |
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Ensembl
AH9.1AH9.1AH9.1223 XReverseView as cDNA map |
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Ensembl
AH9.2AH9.2crn-4123 XReverseView as cDNA map |
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Ensembl
AH9.4AH9.4AH9.4323 XReverseView as cDNA map |
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AH9.6AH9.6AH9.6123 XReverseView as cDNA map |
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AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]
B0198.1B0198.1tsp-20423 XReverseView as cDNA map |
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Ensembl
B0198.2B0198.2aB0198.2123 XForwardView as cDNA map |
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Ensembl
B0198.2B0198.2bB0198.2123 XForwardView as cDNA map |
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Ensembl
B0198.3B0198.3aB0198.3623 XReverseView as cDNA map |
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Ensembl
B0272.1B0272.1tbb-4123 XReverseView as cDNA map |
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Ensembl
B0294.1B0294.1B0294.1223 XReverseView as cDNA map |
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Ensembl
B0302.1B0302.1a.1kin-25723 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25623 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25523 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.5B0302.5B0302.5223 XReverseView as cDNA map |
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Ensembl
B0310.2B0310.2.1B0310.2423 XReverseView as cDNA map |
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Ensembl
B0310.2B0310.2.2B0310.2223 XReverseView as cDNA map |
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B0310.5B0310.5ugt-46123 XReverseView as cDNA map |
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Ensembl
B0344.2B0344.2wrt-9623 XForwardView as cDNA map |
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Ensembl
wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.1B0395.1nhx-1123 XForwardView as cDNA map |
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Ensembl
nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.2B0395.2mboa-1223 XForwardView as cDNA map |
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mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0395.3B0395.3.1B0395.3123 XReverseView as cDNA map |
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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3B0395.3.2B0395.3123 XReverseView as cDNA map |
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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2B0403.2ubc-17123 XForwardView as cDNA map |
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B0403.3B0403.3B0403.3223 XReverseView as cDNA map |
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B0403.4B0403.4tag-320423 XReverseView as cDNA map |
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B0403.5B0403.5B0403.5223 XForwardView as cDNA map |
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B0403.6B0403.6B0403.6123 XReverseView as cDNA map |
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B0410.2B0410.2avang-1423 XForwardView as cDNA map |
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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2B0410.2bvang-1423 XForwardView as cDNA map |
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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.3B0410.3B0410.3123 XReverseView as cDNA map |
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B0416.1B0416.1B0416.1623 XForwardView as cDNA map |
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B0416.3B0416.3B0416.3123 XForwardView as cDNA map |
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B0416.4B0416.4B0416.4223 XForwardView as cDNA map |
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B0416.5B0416.5aB0416.5323 XReverseView as cDNA map |
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B0416.6B0416.6gly-13323 XReverseView as cDNA map |
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gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0416.7B0416.7aB0416.7123 XReverseView as cDNA map |
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B0563.1B0563.1B0563.1123 XForwardView as cDNA map |
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B0563.5B0563.5B0563.5123 XForwardView as cDNA map |
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B0563.6B0563.6aB0563.6123 XForwardView as cDNA map |
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B0563.6B0563.6b.1B0563.6123 XForwardView as cDNA map |
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B0563.6B0563.6cB0563.6123 XForwardView as cDNA map |
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B0563.8B0563.8B0563.8123 XReverseView as cDNA map |
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C01C10.1C01C10.1clc-2123 XForwardView as cDNA map |
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clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase]
C01C10.2C01C10.2aC01C10.2123 XReverseView as cDNA map |
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C01C10.2C01C10.2bC01C10.2123 XReverseView as cDNA map |
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C01C10.3C01C10.3.1acl-12223 XReverseView as cDNA map |
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C01C10.3C01C10.3.2acl-12223 XReverseView as cDNA map |
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C01C10.4C01C10.4clc-5223 XForwardView as cDNA map |
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Ensembl
clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]
C01C4.2C01C4.2C01C4.2223 XForwardView as cDNA map |
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C01C4.3C01C4.3bC01C4.3523 XForwardView as cDNA map |
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C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1C02B4.1adt-1623 XForwardView as cDNA map |
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The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.2C02B4.2nhr-17123 XReverseView as cDNA map |
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Ensembl
nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase]
C02B8.1C02B8.1.1C02B8.1123 XForwardView as cDNA map |
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C02B8.1C02B8.1.2C02B8.1123 XForwardView as cDNA map |
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C02B8.3C02B8.3C02B8.3123 XForwardView as cDNA map |
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C02B8.4C02B8.4hlh-8123 XForwardView as cDNA map |
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The hlh-8 gene encodes a helix-loop-helix protein required for normal muscle development, and hence for normal defecation and egg-laying. [Source: WormBase]
C02B8.5C02B8.5C02B8.5123 XReverseView as cDNA map |
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C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6C02B8.6C02B8.6323 XReverseView as cDNA map |
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C02B8.7C02B8.7C02B8.7123 XReverseView as cDNA map |
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C02C6.1C02C6.1adyn-1523 XForwardView as cDNA map |
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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1523 XForwardView as cDNA map |
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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.2C02C6.2aolrn-1723 XForwardView as cDNA map |
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olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2C02C6.2bolrn-1623 XForwardView as cDNA map |
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olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02D4.1C02D4.1jud-4123 XForwardView as cDNA map |
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jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.10C02F12.10C02F12.10123 XReverseView as cDNA map |
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C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.1C02F12.1btsp-17123 XForwardView as cDNA map |
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C02F12.3C02F12.3.1C02F12.3123 XReverseView as cDNA map |
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C02F12.3C02F12.3.2C02F12.3123 XReverseView as cDNA map |
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C02F12.4C02F12.4tag-52523 XReverseView as cDNA map |
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C02F12.7C02F12.7tag-278123 XReverseView as cDNA map |
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C02F12.8C02F12.8C02F12.8323 XReverseView as cDNA map |
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C02H7.1C02H7.1dyf-11223 XForwardView as cDNA map |
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dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]
C02H7.2C02H7.2npr-19723 XReverseView as cDNA map |
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C02H7.3C02H7.3aaex-3423 XReverseView as cDNA map |
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aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1C03A3.1aC03A3.1123 XForwardView as cDNA map |
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C03A3.1C03A3.1bC03A3.1223 XForwardView as cDNA map |
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C03A3.2C03A3.2.1C03A3.2123 XForwardView as cDNA map |
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C03A3.3C03A3.3C03A3.3123 XReverseView as cDNA map |
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C03B1.13C03B1.13C03B1.13123 XReverseView as cDNA map |
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C03B1.14C03B1.14C03B1.14123 XReverseView as cDNA map |
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C03B1.1C03B1.1C03B1.1123 XForwardView as cDNA map |
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C03B1.2C03B1.2C03B1.2223 XForwardView as cDNA map |
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C03B1.4C03B1.4C03B1.4323 XForwardView as cDNA map |
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C03B1.5C03B1.5C03B1.5423 XForwardView as cDNA map |
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C03B1.7C03B1.7C03B1.7223 XForwardView as cDNA map |
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C03F11.1C03F11.1C03F11.1223 XForwardView as cDNA map |
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C03F11.2C03F11.2C03F11.2123 XReverseView as cDNA map |
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C03F11.3C03F11.3scav-1223 XReverseView as cDNA map |
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C03F11.4C03F11.4.1C03F11.4123 XReverseView as cDNA map |
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C03F11.4C03F11.4.2C03F11.4123 XReverseView as cDNA map |
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C03F11.4C03F11.4.3C03F11.4123 XReverseView as cDNA map |
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C03G5.11C03G5.11nspc-4223 XReverseView as cDNA map |
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C03G5.12C03G5.12nspc-5123 XForwardView as cDNA map |
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C03G5.13C03G5.13nspc-6123 XReverseView as cDNA map |
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C03G5.1C03G5.1.1sdha-1523 XReverseView as cDNA map |
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sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
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GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation