microRNASeq

Gene ID	Transcript ID	Common Gene Name	# of miRNA targets for specified miRNAs	Chromosome	Strand Direction	Transcript Link to view miRNA target predictions	Gene Link	Description
AH9.6	AH9.6	AH9.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]
B0198.2	B0198.2a	B0198.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.2	B0198.2b	B0198.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.1	B0272.1	tbb-4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.1	B0310.1b	B0310.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]
B0410.2	B0410.2a	vang-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2	B0410.2b	vang-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
C02B4.1	C02B4.1	adt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B8.6	C02B8.6	C02B8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.7	C02F12.7	tag-278	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.8	C02F12.8	C02F12.8	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.7	C03B1.7	C03B1.7	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04A11.3	C04A11.3	gck-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04A11.4	C04A11.4	adm-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C05A9.2	C05A9.2	C05A9.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05C9.2	C05C9.2	C05C9.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05D9.9	C05D9.9a	C05D9.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05D9.9	C05D9.9b	C05D9.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05E7.2	C05E7.2	C05E7.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05E7.4	C05E7.4	C05E7.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05G5.1	C05G5.1	C05G5.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05G5.5	C05G5.5	C05G5.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.4	C06G1.4.1	ain-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase]
C07A12.3	C07A12.3a	nhr-35	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.5	C07A12.5a	spr-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07A4.1	C07A4.1	tiar-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07B5.4	C07B5.4b.1	C07B5.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07B5.4	C07B5.4b.2	C07B5.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C08A9.7	C08A9.7	sdz-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C09C7.1	C09C7.1	zig-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	zig-4 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins. ZIG-4 activity is required for maintenance of ventral nerve cord organization: the AVKL/R and PVQL/R axons of the left and right ventral nerve cords do not maintain their proper spatial positions and drift into the opposite cord. a zig-4::gfp reporter fusion is expressed in the PVT, ASK, BAG, and M2 neurons, with expression also seen during the L1 stage in pharyngeal mesoderm and ectoderm. [Source: WormBase]
C09F12.1	C09F12.1.1	clc-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]
C09F12.1	C09F12.1.2	clc-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]
C10A4.1	C10A4.1	C10A4.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C10E2.3	C10E2.3	hda-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase]
C11E4.1	C11E4.1	C11E4.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C11E4.3	C11E4.3	tag-263	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C11G6.3	C11G6.3	C11G6.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C11G6.3 encodes a plant homeodomain-containing protein that is related to the ING (Inhibitor of Growth) family of proteins that function in regulation of gene expression and are candidate tumor suppressors. [Source: WormBase]
C14A11.7	C14A11.7	ssr-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C14E2.2	C14E2.2	C14E2.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C14F11.3	C14F11.3	lite-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lite-1 encodes a eight-transmembrane protein that is a member of the invertebrate family of Gustatory receptors. LITE-1 functions in neurons as an ultraviolet light receptor required for proper avoidance (photophobic) response to short-wavelength light. ectopic expression of LITE-1 in other tissues, namely body wall and vulval muscles, is sufficient to confer light-responsive muscle contraction. genetic analyses indicate that LITE-1 can stimulate locomotion independent of G protein signaling, as LITE-1 can induce locomotion in near-paralyzed synaptic signaling mutants. further, site of action studies indicate that LITE-1 functions in one or more tail neurons to mediate this light-activated forward locomotion. rescuing LITE-1::GFP fusion proteins reveal expression in the PVT and AVG neurons. [Source: WormBase]
C14H10.2	C14H10.2b.3	C14H10.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C15A7.2	C15A7.2	C15A7.2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C15B12.1	C15B12.1	C15B12.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C15B12.2	C15B12.2.1	C15B12.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C15B12.7	C15B12.7b	cdf-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	a cation diffusion facilitator protein, affects vulva development, genetically interacts with let-60/ras signaling pathway. and is expressed in the vulval muscles, the intestinal cells, and in the vulval precursor cells. [Source: WormBase]
C15H9.1	C15H9.1	nnt-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. [Source: WormBase]
C15H9.3	C15H9.3	C15H9.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.1	C16E9.1	C16E9.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.2	C16E9.2a	C16E9.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.3	C17G1.3a	ugt-23	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.3	C17G1.3b.1	ugt-23	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.3	C17G1.3b.2	ugt-23	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.5	C17G1.5	C17G1.5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.7	C17G1.7.1	C17G1.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6a	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6b	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.1	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.2	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.3	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6d	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C18A11.4	C18A11.4	C18A11.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C18B2.1	C18B2.1	C18B2.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C23H4.4	C23H4.4a	C23H4.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C24A3.1	C24A3.1	C24A3.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C24A8.1	C24A8.1	dop-6	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dop-6 encodes an homolog of mammalian D2 or D3 dopamine receptors, and a paralog of DOP-2/-3. dop-6 is expressed in the nervous system. because of its paralogy, DOP-6 might act redundantly with DOP-2 to promote the basal slowing response to bacterial feeding, or it might account for the residual response to excess dopamine seen in triple dop-1/-2/-3 mutants. but dop-6 otherwise has no obvious function in RNAi assays of brood size, egg laying, pharyngeal pumping, locomotion, or male mating. [Source: WormBase]
C24A8.3	C24A8.3	pqn-15	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]
C24A8.6	C24A8.6	C24A8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C25B8.3	C25B8.3a	cpr-6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C25B8.3	C25B8.3b	cpr-6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C25B8.3	C25B8.3c	cpr-6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C25F6.2	C25F6.2a.1	dlg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2	C25F6.2a.2	dlg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25G6.3	C25G6.3	C25G6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C26B9.5	C26B9.5	C26B9.5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C29F7.1	C29F7.1	C29F7.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C30F2.2	C30F2.2	C30F2.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C30F2.3	C30F2.3	C30F2.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C30G4.3	C30G4.3	gcy-11	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C30G4.5	C30G4.5	C30G4.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C30G4.7	C30G4.7	C30G4.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C31E10.1	C31E10.1	C31E10.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C31E10.5	C31E10.5	C31E10.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C31H2.1	C31H2.1b	tbc-7	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C31H2.2	C31H2.2	dpy-8	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate. dpy-8 interacts genetically with emb-5 and glp-1. [Source: WormBase]
C31H2.4	C31H2.4	C31H2.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C31H2.4 encodes a possible 4-hydroxyphenylpyruvate dioxygenase, orthologous to human HPDL/GLOXD1, and paralogous to HPD-1 and human HPD (OMIM:609695, mutated in tyrosinemia type III). C31H2.4 has no obvious function in mass RNAi experiments. [Source: WormBase]
C33D12.7	C33D12.7	ceh-30	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	ceh-30 encodes a homeodomain protein most similar to Drosophila and mammalian BarH1 (OMIM:605211) which function in neuronal cell fate determination. the precise biological role of CEH-30 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C33G3.6	C33G3.6.1	C33G3.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C33G3.6	C33G3.6.2	C33G3.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C34D10.2	C34D10.2.1	C34D10.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34D10.2	C34D10.2.2	C34D10.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.1	C34E11.1.1	rsd-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.1	C34E11.1.2	rsd-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3a	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3b	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3c	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3d	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E7.4	C34E7.4	C34E7.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C35B8.3	C35B8.3a.1	C35B8.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C35B8.3	C35B8.3a.2	C35B8.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C35B8.3	C35B8.3a.3	C35B8.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl

Gene ID

Transcript ID

Common Gene Name

# of miRNA targets
for specified miRNAs

Chromosome

Strand Direction

Transcript Link to view miRNA target predictions

Gene Link

Description

AH9.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]

B0198.2

B0198.2a

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.2

B0198.2b

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.1

tbb-4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0310.1

B0310.1b

B0310.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]

B0410.2

B0410.2a

vang-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]

B0410.2

B0410.2b

vang-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C02B4.1

adt-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]

C02B8.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02F12.7

tag-278

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02F12.8

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C03B1.7

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C04A11.3

gck-4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C04A11.4

adm-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]

C05A9.2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05C9.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C05D9.9

C05D9.9a

C05D9.9

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05D9.9

C05D9.9b

C05D9.9

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05E7.2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05E7.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C05G5.1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05G5.5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C06G1.4

C06G1.4.1

ain-1

23 X

Forward

View as cDNA map |
View as Table

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Ensembl

ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase]

C07A12.3

C07A12.3a

nhr-35

23 X

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C07A12.5

C07A12.5a

spr-3

23 X

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C07A4.1

tiar-3

23 X

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C07B5.4

C07B5.4b.1

C07B5.4

23 X

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C07B5.4

C07B5.4b.2

C07B5.4

23 X

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C08A9.7

sdz-2

23 X

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C09C7.1

zig-4

23 X

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zig-4 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins. ZIG-4 activity is required for maintenance of ventral nerve cord organization: the AVKL/R and PVQL/R axons of the left and right ventral nerve cords do not maintain their proper spatial positions and drift into the opposite cord. a zig-4::gfp reporter fusion is expressed in the PVT, ASK, BAG, and M2 neurons, with expression also seen during the L1 stage in pharyngeal mesoderm and ectoderm. [Source: WormBase]

C09F12.1

C09F12.1.1

clc-1

23 X

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clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]

C09F12.1

C09F12.1.2

clc-1

23 X

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C10A4.1

23 X

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C10E2.3

hda-4

23 X

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hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase]

C11E4.1

23 X

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C11E4.3

tag-263

23 X

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C11G6.3

23 X

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C11G6.3 encodes a plant homeodomain-containing protein that is related to the ING (Inhibitor of Growth) family of proteins that function in regulation of gene expression and are candidate tumor suppressors. [Source: WormBase]

C14A11.7

ssr-2

23 X

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C14E2.2

23 X

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C14F11.3

lite-1

23 X

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lite-1 encodes a eight-transmembrane protein that is a member of the invertebrate family of Gustatory receptors. LITE-1 functions in neurons as an ultraviolet light receptor required for proper avoidance (photophobic) response to short-wavelength light. ectopic expression of LITE-1 in other tissues, namely body wall and vulval muscles, is sufficient to confer light-responsive muscle contraction. genetic analyses indicate that LITE-1 can stimulate locomotion independent of G protein signaling, as LITE-1 can induce locomotion in near-paralyzed synaptic signaling mutants. further, site of action studies indicate that LITE-1 functions in one or more tail neurons to mediate this light-activated forward locomotion. rescuing LITE-1::GFP fusion proteins reveal expression in the PVT and AVG neurons. [Source: WormBase]

C14H10.2

C14H10.2b.3

C14H10.2

23 X

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C15A7.2

23 X

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C15B12.1

23 X

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C15B12.2

C15B12.2.1

C15B12.2

23 X

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C15B12.7

C15B12.7b

cdf-1

23 X

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a cation diffusion facilitator protein, affects vulva development, genetically interacts with let-60/ras signaling pathway. and is expressed in the vulval muscles, the intestinal cells, and in the vulval precursor cells. [Source: WormBase]

C15H9.1

nnt-1

23 X

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nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. [Source: WormBase]

C15H9.3

23 X

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C16E9.1

23 X

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C16E9.2

C16E9.2a

C16E9.2

23 X

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C17G1.3

C17G1.3a

ugt-23

23 X

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C17G1.3

C17G1.3b.1

ugt-23

23 X

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C17G1.3

C17G1.3b.2

ugt-23

23 X

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C17G1.5

23 X

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C17G1.7

C17G1.7.1

C17G1.7

23 X

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C17H11.6

C17H11.6a

C17H11.6

23 X

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C17H11.6

C17H11.6b

C17H11.6

23 X

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C17H11.6

C17H11.6c.1

C17H11.6

23 X

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C17H11.6

C17H11.6c.2

C17H11.6

23 X

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C17H11.6

C17H11.6c.3

C17H11.6

23 X

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C17H11.6

C17H11.6d

C17H11.6

23 X

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C18A11.4

23 X

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C18B2.1

23 X

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C23H4.4

C23H4.4a

C23H4.4

23 X

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C24A3.1

23 X

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C24A8.1

dop-6

23 X

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dop-6 encodes an homolog of mammalian D2 or D3 dopamine receptors, and a paralog of DOP-2/-3. dop-6 is expressed in the nervous system. because of its paralogy, DOP-6 might act redundantly with DOP-2 to promote the basal slowing response to bacterial feeding, or it might account for the residual response to excess dopamine seen in triple dop-1/-2/-3 mutants. but dop-6 otherwise has no obvious function in RNAi assays of brood size, egg laying, pharyngeal pumping, locomotion, or male mating. [Source: WormBase]

C24A8.3

pqn-15

23 X

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The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]

C24A8.6

23 X

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C25B8.3

C25B8.3a

cpr-6

23 X

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C25B8.3

C25B8.3b

cpr-6

23 X

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C25B8.3

C25B8.3c

cpr-6

23 X

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C25F6.2

C25F6.2a.1

dlg-1

23 X

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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]

C25F6.2

C25F6.2a.2

dlg-1

23 X

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C25G6.3

23 X

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C26B9.5

23 X

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C29F7.1

23 X

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C30F2.2

23 X

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C30F2.3

23 X

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C30G4.3

gcy-11

23 X

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C30G4.5

23 X

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C30G4.7

23 X

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C31E10.1

23 X

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C31E10.5

23 X

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C31H2.1

C31H2.1b

tbc-7

23 X

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C31H2.2

dpy-8

23 X

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dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate. dpy-8 interacts genetically with emb-5 and glp-1. [Source: WormBase]

C31H2.4

23 X

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C31H2.4 encodes a possible 4-hydroxyphenylpyruvate dioxygenase, orthologous to human HPDL/GLOXD1, and paralogous to HPD-1 and human HPD (OMIM:609695, mutated in tyrosinemia type III). C31H2.4 has no obvious function in mass RNAi experiments. [Source: WormBase]

C33D12.7

ceh-30

23 X

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ceh-30 encodes a homeodomain protein most similar to Drosophila and mammalian BarH1 (OMIM:605211) which function in neuronal cell fate determination. the precise biological role of CEH-30 in C. elegans development and/or behavior is not yet known. [Source: WormBase]

C33G3.6

C33G3.6.1

C33G3.6

23 X

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C33G3.6

C33G3.6.2

C33G3.6

23 X

Reverse