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Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-41-3p (MIMAT0000012)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
AC8.12AC8.12AC8.12123 XForwardView as cDNA map |
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Ensembl
AC8.7AC8.7AC8.7123 XForwardView as cDNA map |
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Ensembl
AH9.6AH9.6AH9.6123 XReverseView as cDNA map |
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Ensembl
AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]
B0198.2B0198.2aB0198.2123 XForwardView as cDNA map |
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Ensembl
B0198.2B0198.2bB0198.2123 XForwardView as cDNA map |
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Ensembl
B0302.1B0302.1a.1kin-25223 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25223 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25223 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0344.2B0344.2wrt-9123 XForwardView as cDNA map |
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Ensembl
wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0416.1B0416.1B0416.1123 XForwardView as cDNA map |
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Ensembl
B0416.6B0416.6gly-13123 XReverseView as cDNA map |
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Ensembl
gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0563.10B0563.10B0563.10123 XReverseView as cDNA map |
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Ensembl
B0563.7B0563.7B0563.7123 XReverseView as cDNA map |
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Ensembl
C02B4.1C02B4.1adt-1123 XForwardView as cDNA map |
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Ensembl
The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B8.5C02B8.5C02B8.5123 XReverseView as cDNA map |
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Ensembl
C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02C6.2C02C6.2aolrn-1123 XForwardView as cDNA map |
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Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2C02C6.2bolrn-1123 XForwardView as cDNA map |
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Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02D4.2C02D4.2eser-2123 XReverseView as cDNA map |
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Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C03A3.3C03A3.3C03A3.3123 XReverseView as cDNA map |
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C03B1.5C03B1.5C03B1.5123 XForwardView as cDNA map |
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C03F11.3C03F11.3scav-1123 XReverseView as cDNA map |
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C03G5.10C03G5.10nspc-3123 XForwardView as cDNA map |
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C03G5.12C03G5.12nspc-5123 XForwardView as cDNA map |
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C03G5.13C03G5.13nspc-6123 XReverseView as cDNA map |
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Ensembl
C03G5.9C03G5.9nspc-2123 XForwardView as cDNA map |
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C03H12.1C03H12.1C03H12.1123 XForwardView as cDNA map |
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Ensembl
C04A11.3C04A11.3gck-4123 XForwardView as cDNA map |
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C04A11.4C04A11.4adm-2123 XForwardView as cDNA map |
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adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C04B4.4C04B4.4C04B4.4223 XForwardView as cDNA map |
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Ensembl
C05A9.1C05A9.1apgp-5223 XReverseView as cDNA map |
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Ensembl
pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05A9.1C05A9.1bpgp-5223 XReverseView as cDNA map |
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Ensembl
pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05D9.7C05D9.7C05D9.7123 XReverseView as cDNA map |
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Ensembl
C05E7.2C05E7.2C05E7.2123 XReverseView as cDNA map |
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Ensembl
C05G5.2C05G5.2C05G5.2123 XForwardView as cDNA map |
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Ensembl
C07A12.3C07A12.3anhr-35123 XForwardView as cDNA map |
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Ensembl
C07A4.1C07A4.1tiar-3123 XForwardView as cDNA map |
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Ensembl
C07B5.4C07B5.4b.1C07B5.4123 XForwardView as cDNA map |
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Ensembl
C07B5.4C07B5.4b.2C07B5.4123 XForwardView as cDNA map |
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Ensembl
C08A9.7C08A9.7sdz-2123 XReverseView as cDNA map |
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Ensembl
C09B7.1C09B7.1aser-7123 XForwardView as cDNA map |
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Ensembl
ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase]
C09B7.1C09B7.1bser-7123 XForwardView as cDNA map |
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Ensembl
ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase]
C09B7.1C09B7.1cser-7123 XForwardView as cDNA map |
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Ensembl
ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase]
C09B8.3C09B8.3C09B8.3123 XReverseView as cDNA map |
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Ensembl
C09B8.7C09B8.7a.1pak-1123 XReverseView as cDNA map |
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pak-1 encodes, by alternative splicing, at least five isoforms of a putative p21-activated kinase orthologous to human PAK1, PAK2 (OMIM:?), and PAK3 (OMIM:300142, mutated in nonsyndromic mental retardation). PAK-1 is required (redundantly with its paralog, MAX-2) for normal axonal guidance of motoneurons, P cell migration, and locomotion, with max-2(cy2).pak-1(ok448) double mutants phenotypically resembling unc-73 or ced-10.mig-2 mutants. pak-1 is expressed in pharyngeal muscles, CAN neurons, ventral cord motoneurons, migrating distal tip cells, developing uterus, B, Y, and T cells in the male tail, and vulval muscle cells. by itself, the null pak-1(ok448) mutation has no known phenotype. [Source: WormBase]
C09B8.7C09B8.7a.2pak-1123 XReverseView as cDNA map |
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Ensembl
pak-1 encodes, by alternative splicing, at least five isoforms of a putative p21-activated kinase orthologous to human PAK1, PAK2 (OMIM:?), and PAK3 (OMIM:300142, mutated in nonsyndromic mental retardation). PAK-1 is required (redundantly with its paralog, MAX-2) for normal axonal guidance of motoneurons, P cell migration, and locomotion, with max-2(cy2).pak-1(ok448) double mutants phenotypically resembling unc-73 or ced-10.mig-2 mutants. pak-1 is expressed in pharyngeal muscles, CAN neurons, ventral cord motoneurons, migrating distal tip cells, developing uterus, B, Y, and T cells in the male tail, and vulval muscle cells. by itself, the null pak-1(ok448) mutation has no known phenotype. [Source: WormBase]
C09E10.2C09E10.2adgk-1223 XReverseView as cDNA map |
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dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2C09E10.2bdgk-1223 XReverseView as cDNA map |
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Ensembl
dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2C09E10.2cdgk-1223 XReverseView as cDNA map |
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Ensembl
dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2C09E10.2ddgk-1223 XReverseView as cDNA map |
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Ensembl
dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2C09E10.2edgk-1223 XReverseView as cDNA map |
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Ensembl
dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09F12.3C09F12.3C09F12.3123 XReverseView as cDNA map |
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C10A4.4C10A4.4C10A4.4123 XForwardView as cDNA map |
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C10A4.9C10A4.9C10A4.9123 XForwardView as cDNA map |
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C11G6.3C11G6.3C11G6.3123 XForwardView as cDNA map |
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C11G6.3 encodes a plant homeodomain-containing protein that is related to the ING (Inhibitor of Growth) family of proteins that function in regulation of gene expression and are candidate tumor suppressors. [Source: WormBase]
C14E2.4C14E2.4C14E2.4223 XReverseView as cDNA map |
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C14E2.7C14E2.7C14E2.7123 XForwardView as cDNA map |
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C14F11.1C14F11.1aC14F11.1123 XForwardView as cDNA map |
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C14F11.1C14F11.1b.1C14F11.1123 XForwardView as cDNA map |
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C14F11.1C14F11.1b.2C14F11.1123 XForwardView as cDNA map |
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C14F11.5C14F11.5ahsp-43123 XReverseView as cDNA map |
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hsp-43 encodes a member of the hsp20 family. [Source: WormBase]
C14F11.5C14F11.5bhsp-43123 XReverseView as cDNA map |
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hsp-43 encodes a member of the hsp20 family. [Source: WormBase]
C15A7.1C15A7.1lgc-23123 XForwardView as cDNA map |
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C15B12.7C15B12.7bcdf-1123 XReverseView as cDNA map |
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a cation diffusion facilitator protein, affects vulva development, genetically interacts with let-60/ras signaling pathway. and is expressed in the vulval muscles, the intestinal cells, and in the vulval precursor cells. [Source: WormBase]
C15B12.8C15B12.8C15B12.8123 XForwardView as cDNA map |
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C15C7.7C15C7.7C15C7.7123 XForwardView as cDNA map |
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C15H9.1C15H9.1nnt-1223 XForwardView as cDNA map |
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nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. [Source: WormBase]
C15H9.5C15H9.5.1C15H9.5123 XForwardView as cDNA map |
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C15H9.5C15H9.5.2C15H9.5123 XForwardView as cDNA map |
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C15H9.7C15H9.7.1C15H9.7123 XReverseView as cDNA map |
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C15H9.7C15H9.7.2C15H9.7123 XReverseView as cDNA map |
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C16H3.3C16H3.3aC16H3.3123 XReverseView as cDNA map |
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C16H3.3C16H3.3bC16H3.3123 XReverseView as cDNA map |
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C17G1.3C17G1.3augt-23123 XReverseView as cDNA map |
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C17G1.3C17G1.3b.1ugt-23123 XReverseView as cDNA map |
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C17G1.3C17G1.3b.2ugt-23123 XReverseView as cDNA map |
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C17G1.4C17G1.4anra-3123 XReverseView as cDNA map |
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C17G1.4C17G1.4bnra-3123 XReverseView as cDNA map |
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C17G1.7C17G1.7.1C17G1.7123 XReverseView as cDNA map |
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C17H11.6C17H11.6aC17H11.6123 XReverseView as cDNA map |
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C17H11.6C17H11.6bC17H11.6123 XReverseView as cDNA map |
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C17H11.6C17H11.6c.1C17H11.6123 XReverseView as cDNA map |
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C17H11.6C17H11.6c.2C17H11.6123 XReverseView as cDNA map |
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C17H11.6C17H11.6c.3C17H11.6123 XReverseView as cDNA map |
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C17H11.6C17H11.6dC17H11.6123 XReverseView as cDNA map |
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C18B12.2C18B12.2C18B12.2123 XForwardView as cDNA map |
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C18B12.2 encodes a G-protein-coupled receptor (GPCR) that is a member of the secretin family (also known as family B or family 2) of GPCRs. [Source: WormBase]
C18B12.5C18B12.5fbxa-97123 XReverseView as cDNA map |
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C18B12.6C18B12.6C18B12.6123 XReverseView as cDNA map |
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C23F12.1C23F12.1afln-2223 XForwardView as cDNA map |
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C23F12.1C23F12.1cfln-2223 XForwardView as cDNA map |
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C23F12.1C23F12.1dfln-2223 XForwardView as cDNA map |
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C23H4.1C23H4.1.1cab-1123 XReverseView as cDNA map |
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Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.2cab-1123 XReverseView as cDNA map |
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Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.3cab-1123 XReverseView as cDNA map |
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Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.4cab-1123 XReverseView as cDNA map |
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Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.3C23H4.3C23H4.3123 XForwardView as cDNA map |
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C23H4.4C23H4.4aC23H4.4123 XForwardView as cDNA map |
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C24A3.4C24A3.4C24A3.4123 XForwardView as cDNA map |
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C24A8.3C24A8.3pqn-15223 XReverseView as cDNA map |
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The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]
C25A11.1C25A11.1.2C25A11.1123 XForwardView as cDNA map |
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C25A11.2C25A11.2.1C25A11.2223 XForwardView as cDNA map |
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Ensembl
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GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation