microRNASeq

Gene ID	Transcript ID	Common Gene Name	# of miRNA targets for specified miRNAs	Chromosome	Strand Direction	Transcript Link to view miRNA target predictions	Gene Link	Description
B0198.2	B0198.2a	B0198.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0302.1	B0302.1a.1	kin-25	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1a.2	kin-25	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1b	kin-25	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0395.2	B0395.2	mboa-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0410.2	B0410.2b	vang-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0416.1	B0416.1	B0416.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02B4.1	C02B4.1	adt-1	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B8.5	C02B8.5	C02B8.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6	C02B8.6	C02B8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.4	C02F12.4	tag-52	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.7	C02F12.7	tag-278	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02H7.3	C02H7.3a	aex-3	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.2	C03A3.2.1	C03A3.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.13	C03B1.13	C03B1.13	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.2	C03F11.2	C03F11.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.3	C03F11.3	scav-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03G5.1	C03G5.1.1	sdha-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.1	C03G5.1.2	sdha-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C04A11.3	C04A11.3	gck-4	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04A11.4	C04A11.4	adm-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C04B4.2	C04B4.2	C04B4.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04F6.4	C04F6.4a	unc-78	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils. [Source: WormBase]
C04F6.7	C04F6.7	C04F6.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05A9.1	C05A9.1a	pgp-5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05A9.1	C05A9.1b	pgp-5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05C9.1	C05C9.1	C05C9.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05D9.2	C05D9.2.1	lmp-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05D9.2	C05D9.2.2	lmp-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05D9.2	C05D9.2.3	lmp-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05E11.4	C05E11.4	amt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05E11.5	C05E11.5	amt-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	amt-4 encodes a member of the ammonium transporter protein family. [Source: WormBase]
C05E7.4	C05E7.4	C05E7.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05G5.4	C05G5.4.1	C05G5.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05G5.4	C05G5.4.2	C05G5.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.1	C06G1.1a	C06G1.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.1	C06G1.1b	C06G1.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.5	C06G1.5	C06G1.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.6	C06G1.6	C06G1.6	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.1	C07A12.1a	ham-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose. HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification. HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete. [Source: WormBase]
C07A12.1	C07A12.1b	ham-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose. HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification. HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete. [Source: WormBase]
C07A12.1	C07A12.1c	ham-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose. HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification. HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete. [Source: WormBase]
C07A4.2	C07A4.2	C07A4.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07B5.5	C07B5.5	nuc-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The nuc-1 gene encodes a DNase II homolog similar to mammalian and Drosophila DNaseII enzymes and is required for DNA degradation during apoptosis as well as for degradation of dietary DNA during normal feeding. during apoptosis, NUC-1 functions in apoptotic cells at an intermediate stage of DNA degradation, after the killing step, but prior to cell-corpse engulfment. [Source: WormBase]
C09B8.1	C09B8.1	ipp-5	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	ipp-5 encodes a type I inositol 5-phosphatase homolog. ipp-5 acts downstream of let-23 to negatively regulate IP3 signaling and is involved in spermathecal contractions during ovulation. an ipp-5::gfp transcriptional reporter is expressed in the adult distal spermatheca and weakly in the proximal sheath. [Source: WormBase]
C09B8.5	C09B8.5	C09B8.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C09E10.2	C09E10.2a	dgk-1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2	C09E10.2b	dgk-1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2	C09E10.2c	dgk-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2	C09E10.2d	dgk-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09E10.2	C09E10.2e	dgk-1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]
C09F12.2	C09F12.2	C09F12.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C09G1.2	C09G1.2	C09G1.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C10A4.1	C10A4.1	C10A4.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C10A4.8	C10A4.8	mnm-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C10E2.3	C10E2.3	hda-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase]
C11E4.1	C11E4.1	C11E4.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C11E4.6	C11E4.6.1	C11E4.6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C11E4.6	C11E4.6.2	C11E4.6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C11G10.1	C11G10.1	C11G10.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C11H1.9	C11H1.9a	C11H1.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C11H1.9	C11H1.9b	C11H1.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C12D12.1	C12D12.1a	C12D12.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C12D12.1	C12D12.1b	C12D12.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C12D12.1	C12D12.1c	C12D12.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C12D12.2	C12D12.2a.1	glt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	glt-1 encodes a predicted plasma membrane glutamate transporter that is functional when expressed in Xenopus oocytes. expressed in the M3 pharyngeal neuron, the male tail, some anterior hypodermal cells, and in cells in the terminal bulb of the pharynx. [Source: WormBase]
C12D12.2	C12D12.2a.2	glt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	glt-1 encodes a predicted plasma membrane glutamate transporter that is functional when expressed in Xenopus oocytes. expressed in the M3 pharyngeal neuron, the male tail, some anterior hypodermal cells, and in cells in the terminal bulb of the pharynx. [Source: WormBase]
C14E2.5	C14E2.5	C14E2.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C14F11.1	C14F11.1a	C14F11.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C14F11.1	C14F11.1b.1	C14F11.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C14F11.1	C14F11.1b.2	C14F11.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C14F5.2	C14F5.2	zig-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	zig-3 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins. a zig-3::gfp reporter fusion is expressed in the PVT, AIM, and ASI neurons, as well as in the vulva and weakly in the body wall muscle. [Source: WormBase]
C14F5.4	C14F5.4.1	sfxn-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C14F5.4	C14F5.4.2	sfxn-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C15B12.7	C15B12.7b	cdf-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	a cation diffusion facilitator protein, affects vulva development, genetically interacts with let-60/ras signaling pathway. and is expressed in the vulval muscles, the intestinal cells, and in the vulval precursor cells. [Source: WormBase]
C15C7.2	C15C7.2.1	klp-8	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	klp-8 encodes an atypical kinesin-like motor protein with the motor domain in the N-terminus. the motor domain of KLP-8 exhibits poor homology to the globular motor domain of the kinesin heavy chain. [Source: WormBase]
C15C7.2	C15C7.2.2	klp-8	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	klp-8 encodes an atypical kinesin-like motor protein with the motor domain in the N-terminus. the motor domain of KLP-8 exhibits poor homology to the globular motor domain of the kinesin heavy chain. [Source: WormBase]
C15C7.6	C15C7.6	C15C7.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C15H9.4	C15H9.4	C15H9.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C15H9.5	C15H9.5.1	C15H9.5	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C15H9.5	C15H9.5.2	C15H9.5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16D6.3	C16D6.3	C16D6.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.1	C16E9.1	C16E9.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.2	C16E9.2a	C16E9.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.2	C16E9.2b	C16E9.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C16E9.4	C16E9.4a	inx-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase]
C17G1.1	C17G1.1	C17G1.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.4	C17G1.4a	nra-3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.4	C17G1.4b	nra-3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17G1.6	C17G1.6a	nas-37	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	nas-37 encodes a Astacin-class metalloprotease required for full ecdysis that is expressed in hypodermal cells 4 hours before each ecdysis. NAS-37 protein has an N-terminal signal sequence followed by an Astacin protease domain and three protein-binding domains (EGF-like, CUB, and thrombospondin). NAS-37 accumulates in anterior cuticle, being shed with it after ecdysis. nas-37 mutants fail to complete anterior ecdysis at each molt. nas-37(ox196) mutations alter an evolutionarily invariant histidine residue yet are phenotypically indistinguishable from null mutations, consistent with the hypothesis that NAS-37 encodes a functional protease. NAS-37 orthologs are found in other nematodes such as Brugia malayi. [Source: WormBase]
C17H11.6	C17H11.6a	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6b	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.1	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.2	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.3	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6d	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C18B12.4	C18B12.4	C18B12.4	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C18B2.6	C18B2.6	C18B2.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C23H4.2	C23H4.2	C23H4.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C23H4.6	C23H4.6a	C23H4.6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl

Gene ID

Transcript ID

Common Gene Name

# of miRNA targets
for specified miRNAs

Chromosome

Strand Direction

Transcript Link to view miRNA target predictions

Gene Link

Description

B0198.2

B0198.2a

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0302.1

B0302.1a.1

kin-25

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1a.2

kin-25

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1b

kin-25

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0395.2

mboa-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]

B0410.2

B0410.2b

vang-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]

B0416.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C02B4.1

adt-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]

C02B8.5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]

C02B8.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02F12.4

tag-52

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02F12.7

tag-278

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C02H7.3

C02H7.3a

aex-3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]

C03A3.2

C03A3.2.1

C03A3.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C03B1.13

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C03F11.2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C03F11.3

scav-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C03G5.1

C03G5.1.1

sdha-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]

C03G5.1

C03G5.1.2

sdha-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C04A11.3

gck-4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C04A11.4

adm-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]

C04B4.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C04F6.4

C04F6.4a

unc-78

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils. [Source: WormBase]

C04F6.7

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05A9.1

C05A9.1a

pgp-5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]

C05A9.1

C05A9.1b

pgp-5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C05C9.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C05D9.2

C05D9.2.1

lmp-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]

C05D9.2

C05D9.2.2

lmp-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]

C05D9.2

C05D9.2.3

lmp-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]

C05E11.4

amt-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]

C05E11.5

amt-4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

amt-4 encodes a member of the ammonium transporter protein family. [Source: WormBase]

C05E7.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C05G5.4

C05G5.4.1

C05G5.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C05G5.4

C05G5.4.2

C05G5.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C06G1.1

C06G1.1a

C06G1.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C06G1.1

C06G1.1b

C06G1.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C06G1.5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C06G1.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C07A12.1

C07A12.1a

ham-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

The ham-2 gene encodes a C2H2 zinc finger-containing protein required for proper migration of the hermaphrodite-specific neurons (HSNs) and proper attachment of the pharynx to the nose. HAM-2 is expressed in the nuclei of the HSNs during migration, and acts downstream of EGL-5, a posterior group Hox protein, in HSN specification. HAM-2 acts redundantly with UNC-86 to downregulate UNC-43 expression in the HSNs after migration is complete. [Source: WormBase]

C07A12.1

C07A12.1b

ham-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C07A12.1

C07A12.1c

ham-2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C07A4.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C07B5.5

nuc-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

The nuc-1 gene encodes a DNase II homolog similar to mammalian and Drosophila DNaseII enzymes and is required for DNA degradation during apoptosis as well as for degradation of dietary DNA during normal feeding. during apoptosis, NUC-1 functions in apoptotic cells at an intermediate stage of DNA degradation, after the killing step, but prior to cell-corpse engulfment. [Source: WormBase]

C09B8.1

ipp-5

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

ipp-5 encodes a type I inositol 5-phosphatase homolog. ipp-5 acts downstream of let-23 to negatively regulate IP3 signaling and is involved in spermathecal contractions during ovulation. an ipp-5::gfp transcriptional reporter is expressed in the adult distal spermatheca and weakly in the proximal sheath. [Source: WormBase]

C09B8.5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C09E10.2

C09E10.2a

dgk-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase]

C09E10.2

C09E10.2b

dgk-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C09E10.2

C09E10.2c

dgk-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C09E10.2

C09E10.2d

dgk-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C09E10.2

C09E10.2e

dgk-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C09F12.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C09G1.2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C10A4.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C10A4.8

mnm-2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C10E2.3

hda-4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

hda-4 encodes a class II histone deacetylase that contains a putative MEF-2 DNA binding domain, a nuclear localization signal domain, and a single catalytic domain and may affect locomotion, body morphology, and growth. interacts with MEF-2 in in vitro assays and is expressed in body-wall muscle, neurons, and hypodermal seam cells [Source: WormBase]

C11E4.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C11E4.6

C11E4.6.1

C11E4.6

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C11E4.6

C11E4.6.2

C11E4.6

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C11G10.1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C11H1.9

C11H1.9a

C11H1.9

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C11H1.9

C11H1.9b

C11H1.9

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C12D12.1

C12D12.1a

C12D12.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C12D12.1

C12D12.1b

C12D12.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C12D12.1

C12D12.1c

C12D12.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C12D12.2

C12D12.2a.1

glt-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

glt-1 encodes a predicted plasma membrane glutamate transporter that is functional when expressed in Xenopus oocytes. expressed in the M3 pharyngeal neuron, the male tail, some anterior hypodermal cells, and in cells in the terminal bulb of the pharynx. [Source: WormBase]

C12D12.2

C12D12.2a.2

glt-1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C14E2.5

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C14F11.1

C14F11.1a

C14F11.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C14F11.1

C14F11.1b.1

C14F11.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C14F11.1

C14F11.1b.2

C14F11.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C14F5.2

zig-3

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

zig-3 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins. a zig-3::gfp reporter fusion is expressed in the PVT, AIM, and ASI neurons, as well as in the vulva and weakly in the body wall muscle. [Source: WormBase]

C14F5.4

C14F5.4.1

sfxn-2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C14F5.4

C14F5.4.2

sfxn-2

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C15B12.7

C15B12.7b

cdf-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

a cation diffusion facilitator protein, affects vulva development, genetically interacts with let-60/ras signaling pathway. and is expressed in the vulval muscles, the intestinal cells, and in the vulval precursor cells. [Source: WormBase]

C15C7.2

C15C7.2.1

klp-8

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

klp-8 encodes an atypical kinesin-like motor protein with the motor domain in the N-terminus. the motor domain of KLP-8 exhibits poor homology to the globular motor domain of the kinesin heavy chain. [Source: WormBase]

C15C7.2

C15C7.2.2

klp-8

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C15C7.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C15H9.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C15H9.5

C15H9.5.1

C15H9.5

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C15H9.5

C15H9.5.2

C15H9.5

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C16D6.3

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C16E9.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C16E9.2

C16E9.2a

C16E9.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C16E9.2

C16E9.2b

C16E9.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C16E9.4

C16E9.4a

inx-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase]

C17G1.1

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

C17G1.4

C17G1.4a

nra-3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C17G1.4

C17G1.4b

nra-3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C17G1.6

C17G1.6a

nas-37

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

nas-37 encodes a Astacin-class metalloprotease required for full ecdysis that is expressed in hypodermal cells 4 hours before each ecdysis. NAS-37 protein has an N-terminal signal sequence followed by an Astacin protease domain and three protein-binding domains (EGF-like, CUB, and thrombospondin). NAS-37 accumulates in anterior cuticle, being shed with it after ecdysis. nas-37 mutants fail to complete anterior ecdysis at each molt. nas-37(ox196) mutations alter an evolutionarily invariant histidine residue yet are phenotypically indistinguishable from null mutations, consistent with the hypothesis that NAS-37 encodes a functional protease. NAS-37 orthologs are found in other nematodes such as Brugia malayi. [Source: WormBase]

C17H11.6

C17H11.6a

C17H11.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

C17H11.6

C17H11.6b

C17H11.6

23 X

Reverse