microRNASeq

Gene ID	Transcript ID	Common Gene Name	# of miRNA targets for specified miRNAs	Chromosome	Strand Direction	Transcript Link to view miRNA target predictions	Gene Link	Description
B0198.2	B0198.2a	B0198.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.2	B0198.2b	B0198.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.1	B0272.1	tbb-4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.1	B0310.1b	B0310.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]
B0403.2	B0403.2	ubc-17	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.4	C01C10.4	clc-5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]
C02B8.5	C02B8.5	C02B8.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6	C02B8.6	C02B8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.8	C02F12.8	C02F12.8	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.1	C03F11.1	C03F11.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04A11.4	C04A11.4	adm-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C04B4.2	C04B4.2	C04B4.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C04B4.5	C04B4.5	C04B4.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C04B4.5 encodes a novel protein. [Source: WormBase]
C05C9.1	C05C9.1	C05C9.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05C9.2	C05C9.2	C05C9.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C05D9.9	C05D9.9a	C05D9.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05D9.9	C05D9.9b	C05D9.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05E11.4	C05E11.4	amt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05E7.2	C05E7.2	C05E7.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C05E7.4	C05E7.4	C05E7.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C06G1.4	C06G1.4.1	ain-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase]
C07A12.3	C07A12.3a	nhr-35	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.7	C07A12.7a.1	C07A12.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.7	C07A12.7a.2	C07A12.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.7	C07A12.7b	C07A12.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C07A12.7	C07A12.7c.1	C07A12.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C09B8.4	C09B8.4	C09B8.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C09F12.1	C09F12.1.1	clc-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]
C09F12.1	C09F12.1.2	clc-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]
C10A4.1	C10A4.1	C10A4.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C10A4.9	C10A4.9	C10A4.9	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C10E2.6	C10E2.6.1	C10E2.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C10E2.6	C10E2.6.2	C10E2.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C13E3.1	C13E3.1	C13E3.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C15B12.6	C15B12.6	C15B12.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C15H9.1	C15H9.1	nnt-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. [Source: WormBase]
C16H3.3	C16H3.3a	C16H3.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C16H3.3	C16H3.3b	C16H3.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6a	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6b	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.1	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.2	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6c.3	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C17H11.6	C17H11.6d	C17H11.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C24A8.1	C24A8.1	dop-6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dop-6 encodes an homolog of mammalian D2 or D3 dopamine receptors, and a paralog of DOP-2/-3. dop-6 is expressed in the nervous system. because of its paralogy, DOP-6 might act redundantly with DOP-2 to promote the basal slowing response to bacterial feeding, or it might account for the residual response to excess dopamine seen in triple dop-1/-2/-3 mutants. but dop-6 otherwise has no obvious function in RNAi assays of brood size, egg laying, pharyngeal pumping, locomotion, or male mating. [Source: WormBase]
C24A8.3	C24A8.3	pqn-15	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]
C24A8.6	C24A8.6	C24A8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C25F6.2	C25F6.2a.1	dlg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2	C25F6.2a.2	dlg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.4	C25F6.4	ddr-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The C25F6.4 gene encodes a protein tyrosine kinase homolog that is also homologous to human RS1. [Source: WormBase]
C26G2.1	C26G2.1	syg-2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron. in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity. a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood. in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. [Source: WormBase]
C26G2.2	C26G2.2	C26G2.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C29F7.1	C29F7.1	C29F7.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C29F7.3	C29F7.3	C29F7.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C30G4.3	C30G4.3	gcy-11	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C30G4.7	C30G4.7	C30G4.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C31E10.1	C31E10.1	C31E10.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C31H2.2	C31H2.2	dpy-8	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate. dpy-8 interacts genetically with emb-5 and glp-1. [Source: WormBase]
C33D12.6	C33D12.6	tag-312	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C33D3.1	C33D3.1	elt-2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	elt-2 encodes a GATA-type transcription factor most similar to the vertebrate GATA4-6 transcription factors required for cardiac and endoderm development (OMIM:601656, 600576). in C. elegans, ELT-2 is required redundantly with ELT-7 for initiating and maintaining terminal differentiation of the intestine. ELT-2 is expressed solely in the intestine, beginning embryonically at the 2E-cell stage and continuing in all intestinal cells throughout the life of the animal. in the regulatory hierarchy controlling endoderm development, ELT-2 lies downstream of the maternal regulators SKN-1 and POP-1 and the embryonic GATA factors MED-1/-2, and END-1/-3. in turn, ELT-2, along with ELT-7, likely regulates transcription of a number of intestine-specific terminal differentiation genes such as ges-1, ifb-2, pha-4, as well as genes involved in the intestinal epithelial innate immune response. ELT-2 also positively autoregulates, presumably to ensure maintenance of intestinal differentiation. [Source: WormBase]
C33G3.4	C33G3.4	C33G3.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C33G3.4 is orthologous to the human gene BETA-MANNOSIDASE (MANBA. OMIM:248510), which when mutated leads to disease. [Source: WormBase]
C33G3.6	C33G3.6.1	C33G3.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C33G3.6	C33G3.6.2	C33G3.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C34D10.2	C34D10.2.1	C34D10.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34D10.2	C34D10.2.2	C34D10.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.1	C34E11.1.1	rsd-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.1	C34E11.1.2	rsd-3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3a	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3b	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3c	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34E11.3	C34E11.3d	tag-241	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C34H3.1	C34H3.1	tag-275	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C35B8.2	C35B8.2b	vav-1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	vav-1 encodes a Rho/Rac-family guanine nucleotide exchange factor orthologous to the Vav proto-oncogene. VAV-1 is a complex protein with several domains, from N- to C-terminus: a calponin-like actin-binding domain. a RhoGEF/DH domain. a pleckstrin-like domain. a SH2 motif domain. and an SH3 domain. in C. elegans vav-1 is an essential gene and functions to regulate the concentration of intracellular calcium and thus, plays a key role in regulating rhythmic behaviors such as pharyngeal pumping, ovulation, and defecation. in addition, vav-1 has been shown to be a target of the mir-61 miRNA in the secondary vulval precursor cells, where it functions to negatively regulate LIN-12 activity. VAV-1::GFP reporters are expressed in the pharynx, the contractile sheath cells of the gonad, the four posterior-most intestinal cells, and the three rectal epithelial cells. VAV-1::GFP is also seen in the distal gonad, body wall muscle, and in the vulval precursor cells and their descendants. [Source: WormBase]
C35C5.6	C35C5.6	C35C5.6	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C36C9.2	C36C9.2	tbx-31	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	tbx-31 encodes a diverged member of the T-box transcription factor family. by homology, TBX-31 is predicted to function as a transcriptional regulator during development, but as loss of tbx-31 activity via RNAi results in no obvious defects, the precise role of TBX-31 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C36E6.1	C36E6.1a	C36E6.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA. they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. [Source: WormBase]
C36E6.1	C36E6.1b	C36E6.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA. they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. [Source: WormBase]
C37E2.5	C37E2.5	ceh-37	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ceh-37 encodes one of three C. elegans proteins with an OTX-like homeodomain. however, CEH-37 lacks other domains found in OTX proteins, and the CEH-37 homeodomain is predicted to resemble the Myb domain of telomere-binding proteins. CEH-37 binds the telomeric sequence 'TTAGGC' if it is repeated at least 1.5 times, and is mainly localized to the telomere in vivo. ceh-37 mutants have a weak increase in chromosomal nondisjunction. CEH-37 is involved in specifying some aspects of the AWB olfactory neuron fate, such as expression of an AWB-specific odorant receptor and a LIM-class homeodomain protein, LIM-4. CEH-37 is expressed broadly in the early embryo, while in larvae and adults it is expressed solely in the excretory cell. [Source: WormBase]
C39B10.1	C39B10.1	C39B10.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C39D10.2	C39D10.2	C39D10.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C39D10.5	C39D10.5	C39D10.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C39E6.1	C39E6.1.1	lon-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lon-2 encodes a member of the glypican family of heparan sulfate proteoglycans. during development, lon-2 activity is required in the hypodermis for negative regulation of the DBL-1/BMP signaling pathway that regulates body length. genetic analyses indicate that lon-2 functions upstream of dbl-1, and in vitro studies show that LON-2 can bind mammalian BMP2, suggesting that LON-2 may directly interact with DBL-1 to negatively regulate DBL-1/BMP signaling. in addition to expression in hypodermis, LON-2 is expressed strongly in the intestine, particularly the anterior and posterior cells. LON-2 localizes to the cell surface. [Source: WormBase]
C39E6.1	C39E6.1.2	lon-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lon-2 encodes a member of the glypican family of heparan sulfate proteoglycans. during development, lon-2 activity is required in the hypodermis for negative regulation of the DBL-1/BMP signaling pathway that regulates body length. genetic analyses indicate that lon-2 functions upstream of dbl-1, and in vitro studies show that LON-2 can bind mammalian BMP2, suggesting that LON-2 may directly interact with DBL-1 to negatively regulate DBL-1/BMP signaling. in addition to expression in hypodermis, LON-2 is expressed strongly in the intestine, particularly the anterior and posterior cells. LON-2 localizes to the cell surface. [Source: WormBase]
C39E6.1	C39E6.1.3	lon-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lon-2 encodes a member of the glypican family of heparan sulfate proteoglycans. during development, lon-2 activity is required in the hypodermis for negative regulation of the DBL-1/BMP signaling pathway that regulates body length. genetic analyses indicate that lon-2 functions upstream of dbl-1, and in vitro studies show that LON-2 can bind mammalian BMP2, suggesting that LON-2 may directly interact with DBL-1 to negatively regulate DBL-1/BMP signaling. in addition to expression in hypodermis, LON-2 is expressed strongly in the intestine, particularly the anterior and posterior cells. LON-2 localizes to the cell surface. [Source: WormBase]
C40H5.4	C40H5.4	lact-7	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	lact-7 encodes a beta-lactamase domain-containing protein. [Source: WormBase]
C41A3.1	C41A3.1	C41A3.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C41G11.1	C41G11.1a	C41G11.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C41G11.1	C41G11.1b	C41G11.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C42D8.1	C42D8.1.1	C42D8.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C42D8.1	C42D8.1.2	C42D8.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C42D8.3	C42D8.3	pnk-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C44C1.2	C44C1.2	C44C1.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C46C11.4	C46C11.4	C46C11.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C46F2.1	C46F2.1	C46F2.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C46F4.3	C46F4.3	C46F4.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C47C12.6	C47C12.6.1	deg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	deg-1 encodes a putative ion channel for which altered function induces necrotic cell death of neurons required for mechanosensory behavior. expressed in the ASH, IL1, AVD, AVG, and PVC neurons in addition to some muscle cells. [Source: WormBase]
C47C12.6	C47C12.6.2	deg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	deg-1 encodes a putative ion channel for which altered function induces necrotic cell death of neurons required for mechanosensory behavior. expressed in the ASH, IL1, AVD, AVG, and PVC neurons in addition to some muscle cells. [Source: WormBase]
C47C12.6	C47C12.6.3	deg-1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	deg-1 encodes a putative ion channel for which altered function induces necrotic cell death of neurons required for mechanosensory behavior. expressed in the ASH, IL1, AVD, AVG, and PVC neurons in addition to some muscle cells. [Source: WormBase]
C48C5.3	C48C5.3	C48C5.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C49F5.5	C49F5.5	C49F5.5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl

Gene ID

Transcript ID

Common Gene Name

# of miRNA targets
for specified miRNAs

Chromosome

Strand Direction

Transcript Link to view miRNA target predictions

Gene Link

Description

B0198.2

B0198.2a

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.2

B0198.2b

B0198.2

23 X

Forward

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B0272.1

tbb-4

23 X

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B0310.1

B0310.1b

B0310.1

23 X

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B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]

B0403.2

ubc-17

23 X

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C01C10.4

clc-5

23 X

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clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]

C02B8.5

23 X

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C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]

C02B8.6

23 X

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C02F12.8

23 X

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C03F11.1

23 X

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C04A11.4

adm-2

23 X

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adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]

C04B4.2

23 X

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C04B4.5

23 X

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C04B4.5 encodes a novel protein. [Source: WormBase]

C05C9.1

23 X

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C05C9.2

23 X

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C05D9.9

C05D9.9a

C05D9.9

23 X

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C05D9.9

C05D9.9b

C05D9.9

23 X

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C05E11.4

amt-1

23 X

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amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]

C05E7.2

23 X

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C05E7.4

23 X

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C06G1.4

C06G1.4.1

ain-1

23 X

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ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase]

C07A12.3

C07A12.3a

nhr-35

23 X

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C07A12.7

C07A12.7a.1

C07A12.7

23 X

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C07A12.7

C07A12.7a.2

C07A12.7

23 X

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C07A12.7

C07A12.7b

C07A12.7

23 X

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C07A12.7

C07A12.7c.1

C07A12.7

23 X

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C09B8.4

23 X

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C09F12.1

C09F12.1.1

clc-1

23 X

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clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]

C09F12.1

C09F12.1.2

clc-1

23 X

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C10A4.1

23 X

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C10A4.9

23 X

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C10E2.6

C10E2.6.1

C10E2.6

23 X

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C10E2.6

C10E2.6.2

C10E2.6

23 X

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C13E3.1

23 X

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C15B12.6

23 X

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C15H9.1

nnt-1

23 X

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nnt-1 encodes a proton-pumping nicotinamide nucleotide transhydrogenase predicted to be mitochondrial. [Source: WormBase]

C16H3.3

C16H3.3a

C16H3.3

23 X

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C16H3.3

C16H3.3b

C16H3.3

23 X

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C17H11.6

C17H11.6a

C17H11.6

23 X

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C17H11.6

C17H11.6b

C17H11.6

23 X

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C17H11.6

C17H11.6c.1

C17H11.6

23 X

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C17H11.6

C17H11.6c.2

C17H11.6

23 X

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C17H11.6

C17H11.6c.3

C17H11.6

23 X

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C17H11.6

C17H11.6d

C17H11.6

23 X

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C24A8.1

dop-6

23 X

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dop-6 encodes an homolog of mammalian D2 or D3 dopamine receptors, and a paralog of DOP-2/-3. dop-6 is expressed in the nervous system. because of its paralogy, DOP-6 might act redundantly with DOP-2 to promote the basal slowing response to bacterial feeding, or it might account for the residual response to excess dopamine seen in triple dop-1/-2/-3 mutants. but dop-6 otherwise has no obvious function in RNAi assays of brood size, egg laying, pharyngeal pumping, locomotion, or male mating. [Source: WormBase]

C24A8.3

pqn-15

23 X

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The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]

C24A8.6

23 X

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C25F6.2

C25F6.2a.1

dlg-1

23 X

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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]

C25F6.2

C25F6.2a.2

dlg-1

23 X

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C25F6.4

ddr-1

23 X

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The C25F6.4 gene encodes a protein tyrosine kinase homolog that is also homologous to human RS1. [Source: WormBase]

C26G2.1

syg-2

23 X

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syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron. in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity. a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood. in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. [Source: WormBase]

C26G2.2

23 X

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C29F7.1

23 X

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C29F7.3

23 X

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C30G4.3

gcy-11

23 X

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C30G4.7

23 X

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C31E10.1

23 X

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C31H2.2

dpy-8

23 X

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dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate. dpy-8 interacts genetically with emb-5 and glp-1. [Source: WormBase]

C33D12.6

tag-312

23 X

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C33D3.1

elt-2

23 X

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elt-2 encodes a GATA-type transcription factor most similar to the vertebrate GATA4-6 transcription factors required for cardiac and endoderm development (OMIM:601656, 600576). in C. elegans, ELT-2 is required redundantly with ELT-7 for initiating and maintaining terminal differentiation of the intestine. ELT-2 is expressed solely in the intestine, beginning embryonically at the 2E-cell stage and continuing in all intestinal cells throughout the life of the animal. in the regulatory hierarchy controlling endoderm development, ELT-2 lies downstream of the maternal regulators SKN-1 and POP-1 and the embryonic GATA factors MED-1/-2, and END-1/-3. in turn, ELT-2, along with ELT-7, likely regulates transcription of a number of intestine-specific terminal differentiation genes such as ges-1, ifb-2, pha-4, as well as genes involved in the intestinal epithelial innate immune response. ELT-2 also positively autoregulates, presumably to ensure maintenance of intestinal differentiation. [Source: WormBase]

C33G3.4

23 X

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C33G3.4 is orthologous to the human gene BETA-MANNOSIDASE (MANBA. OMIM:248510), which when mutated leads to disease. [Source: WormBase]

C33G3.6

C33G3.6.1

C33G3.6

23 X

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C33G3.6

C33G3.6.2

C33G3.6

23 X

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C34D10.2

C34D10.2.1

C34D10.2

23 X

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C34D10.2

C34D10.2.2

C34D10.2

23 X

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C34E11.1

C34E11.1.1

rsd-3

23 X

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C34E11.1

C34E11.1.2

rsd-3

23 X

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C34E11.3

C34E11.3a

tag-241

23 X

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C34E11.3

C34E11.3b

tag-241

23 X

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C34E11.3

C34E11.3c

tag-241

23 X

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C34E11.3

C34E11.3d

tag-241

23 X

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C34H3.1

tag-275

23 X

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C35B8.2

C35B8.2b

vav-1

23 X

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vav-1 encodes a Rho/Rac-family guanine nucleotide exchange factor orthologous to the Vav proto-oncogene. VAV-1 is a complex protein with several domains, from N- to C-terminus: a calponin-like actin-binding domain. a RhoGEF/DH domain. a pleckstrin-like domain. a SH2 motif domain. and an SH3 domain. in C. elegans vav-1 is an essential gene and functions to regulate the concentration of intracellular calcium and thus, plays a key role in regulating rhythmic behaviors such as pharyngeal pumping, ovulation, and defecation. in addition, vav-1 has been shown to be a target of the mir-61 miRNA in the secondary vulval precursor cells, where it functions to negatively regulate LIN-12 activity. VAV-1::GFP reporters are expressed in the pharynx, the contractile sheath cells of the gonad, the four posterior-most intestinal cells, and the three rectal epithelial cells. VAV-1::GFP is also seen in the distal gonad, body wall muscle, and in the vulval precursor cells and their descendants. [Source: WormBase]

C35C5.6

23 X

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C36C9.2

tbx-31

23 X

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tbx-31 encodes a diverged member of the T-box transcription factor family. by homology, TBX-31 is predicted to function as a transcriptional regulator during development, but as loss of tbx-31 activity via RNAi results in no obvious defects, the precise role of TBX-31 in C. elegans development and/or behavior is not yet known. [Source: WormBase]

C36E6.1

C36E6.1a

C36E6.1

23 X

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C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA. they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. [Source: WormBase]

C36E6.1

C36E6.1b

C36E6.1

23 X

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C37E2.5

ceh-37

23 X

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ceh-37 encodes one of three C. elegans proteins with an OTX-like homeodomain. however, CEH-37 lacks other domains found in OTX proteins, and the CEH-37 homeodomain is predicted to resemble the Myb domain of telomere-binding proteins. CEH-37 binds the telomeric sequence 'TTAGGC' if it is repeated at least 1.5 times, and is mainly localized to the telomere in vivo. ceh-37 mutants have a weak increase in chromosomal nondisjunction. CEH-37 is involved in specifying some aspects of the AWB olfactory neuron fate, such as expression of an AWB-specific odorant receptor and a LIM-class homeodomain protein, LIM-4. CEH-37 is expressed broadly in the early embryo, while in larvae and adults it is expressed solely in the excretory cell. [Source: WormBase]

C39B10.1

23 X

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C39D10.2

23 X

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C39D10.5

23 X

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C39E6.1

C39E6.1.1

lon-2

23 X

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lon-2 encodes a member of the glypican family of heparan sulfate proteoglycans. during development, lon-2 activity is required in the hypodermis for negative regulation of the DBL-1/BMP signaling pathway that regulates body length. genetic analyses indicate that lon-2 functions upstream of dbl-1, and in vitro studies show that LON-2 can bind mammalian BMP2, suggesting that LON-2 may directly interact with DBL-1 to negatively regulate DBL-1/BMP signaling. in addition to expression in hypodermis, LON-2 is expressed strongly in the intestine, particularly the anterior and posterior cells. LON-2 localizes to the cell surface. [Source: WormBase]

C39E6.1

C39E6.1.2

lon-2

23 X

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C39E6.1

C39E6.1.3

lon-2

23 X

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C40H5.4

lact-7

23 X

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lact-7 encodes a beta-lactamase domain-containing protein. [Source: WormBase]

C41A3.1

23 X

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C41G11.1

C41G11.1a

C41G11.1

23 X

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C41G11.1

C41G11.1b

C41G11.1

23 X

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C42D8.1

C42D8.1.1

C42D8.1

23 X

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C42D8.1

C42D8.1.2

C42D8.1

23 X

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C42D8.3

pnk-4

23 X

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C44C1.2

23 X

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C46C11.4

23 X

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C46F2.1

23 X

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C46F4.3

23 X

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C47C12.6

C47C12.6.1

deg-1

23 X

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deg-1 encodes a putative ion channel for which altered function induces necrotic cell death of neurons required for mechanosensory behavior. expressed in the ASH, IL1, AVD, AVG, and PVC neurons in addition to some muscle cells. [Source: WormBase]

C47C12.6

C47C12.6.2

deg-1

23 X

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C47C12.6

C47C12.6.3

deg-1

23 X

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