Back to main page

Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-1021 (MIMAT0005522)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


Please hold, your search is in progress...
TIP! If you show ALL results, you'll be able to dynamically sort by one or multiple columns (hold shift)
TIP! You can save this HTML file locally by going to File->Save As if you want to access it quickly later on


Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
6R55.26R55.26R55.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
AH9.1AH9.1AH9.1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0198.1B0198.1tsp-20123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0198.3B0198.3aB0198.3423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0272.1B0272.1tbb-4123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0272.4B0272.4B0272.4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0294.3B0294.3B0294.3123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]
B0302.1B0302.1a.1kin-25123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.5B0302.5B0302.5123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.1B0310.1bB0310.1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]
B0310.2B0310.2.1B0310.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.2B0310.2.2B0310.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.3B0310.3B0310.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.5B0310.5ugt-46223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0344.2B0344.2wrt-9223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.1B0395.1nhx-1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.3B0395.3.1B0395.3223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3B0395.3.2B0395.3223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.4B0403.4tag-320123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0403.5B0403.5B0403.5123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0403.6B0403.6B0403.6223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0410.3B0410.3B0410.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0416.1B0416.1B0416.1323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.2B0416.2B0416.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.4B0416.4B0416.4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.7B0416.7bB0416.7223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0563.1B0563.1B0563.1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.2B0563.2tsp-11123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6aB0563.6223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6b.1B0563.6223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6b.2B0563.6223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6cB0563.6223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.7B0563.7B0563.7123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.2C01C10.2aC01C10.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.2C01C10.2bC01C10.2123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.3C01C10.3.1acl-12123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.3C01C10.3.2acl-12123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.4C01C10.4clc-5223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]
C01C4.2C01C4.2C01C4.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C01C4.3C01C4.3bC01C4.3123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1C02B4.1adt-1423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02C6.1C02C6.1adyn-1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.2C02C6.2aolrn-1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2C02C6.2bolrn-1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.3C02C6.3aC02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02C6.3C02C6.3bC02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02C6.3C02C6.3cC02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02C6.3C02C6.3d.1C02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02C6.3C02C6.3d.2C02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.10C02F12.10C02F12.10123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.1C02F12.1atsp-17223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.1C02F12.1btsp-17223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.3C02F12.3.1C02F12.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.3C02F12.3.2C02F12.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.3C02F12.3.3C02F12.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.4C02F12.4tag-52123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.5C02F12.5C02F12.5123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.7C02F12.7tag-278123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.8C02F12.8C02F12.8123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02H7.2C02H7.2npr-19223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02H7.3C02H7.3aaex-3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1C03A3.1bC03A3.1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.2C03A3.2.1C03A3.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.3C03A3.3C03A3.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.14C03B1.14C03B1.14123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.2C03B1.2C03B1.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.4C03B1.4C03B1.4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.5C03B1.5C03B1.5123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.6C03B1.6bC03B1.6123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.7C03B1.7C03B1.7223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.3C03F11.3scav-1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03G5.1C03G5.1.1sdha-1623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.1C03G5.1.2sdha-1623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03H12.1C03H12.1C03H12.1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04A11.1C04A11.1C04A11.1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04A11.3C04A11.3gck-4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04A11.4C04A11.4adm-2223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C04B4.2C04B4.2C04B4.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04B4.5C04B4.5C04B4.5223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C04B4.5 encodes a novel protein. [Source: WormBase]
C04E7.1C04E7.1C04E7.1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04E7.2C04E7.2sor-3123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
sor-3 encodes a novel protein that contains an MBT (malignant brain tumor) domain related to the MBT domains found in the Sex comb on midleg (SCM) and Sfmbt Polycomb group proteins. during development, SOR-3 activity is required to specify the correct number of dopaminergic and serotonergic neurons in males, as well as for proper ray neuron axon guidance, distal tip cell migration, and normal body size. SOR-3 activity is necessary for maintaining repression of Hox gene expression, notably that of egl-5 in many head neurons. in regulating neurotransmitter phenotype, sor-3 functions together with sop-2, which also encodes a Polycomb group protein, and members of the TGF-beta signaling pathway. sor-3 and sop-2 also function together to regulate progression through larval development. a SOR-3::GFP reporter fusion is expressed ubiquitously throughout the life cycle and localizes to both the cytoplasm and the nucleus. [Source: WormBase]
C04E7.3C04E7.3C04E7.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C04F6.1C04F6.1vit-5323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent. by homology, VIT-5 is predicted to function as a lipid transport protein. loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth. VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. [Source: WormBase]
C04F6.2C04F6.2C04F6.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C04F6.4C04F6.4aunc-78123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils. [Source: WormBase]
C04F6.5C04F6.5dhs-27123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase]
C05A9.1C05A9.1apgp-5123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05A9.1C05A9.1bpgp-5123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05C9.3C05C9.3C05C9.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]
C05D9.2C05D9.2.1lmp-2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05D9.2C05D9.2.2lmp-2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05D9.2C05D9.2.3lmp-2323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
lmp-2 encodes a transmembrane protein that is one of two C. elegans LAMP (lysosomal associated membrane glycoprotein) homologs. [Source: WormBase]
C05D9.5C05D9.5ife-4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
The ife-4 gene encodes a member of the Initiation Factor 4E (eIF4E) family. [Source: WormBase]
C05E11.3C05E11.3C05E11.3223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C05E11.4C05E11.4amt-1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05E11.5C05E11.5amt-4423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
amt-4 encodes a member of the ammonium transporter protein family. [Source: WormBase]
C05E11.7C05E11.7C05E11.7323 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
Please email us for questions and/or suggestions
GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation