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Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-1823 (MIMAT0006590)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
AC8.12AC8.12AC8.12123 XForwardView as cDNA map |
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Ensembl
AC8.7AC8.7AC8.7123 XForwardView as cDNA map |
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Ensembl
AH9.1AH9.1AH9.1123 XReverseView as cDNA map |
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Ensembl
AH9.4AH9.4AH9.4223 XReverseView as cDNA map |
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Ensembl
B0198.3B0198.3aB0198.3323 XReverseView as cDNA map |
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Ensembl
B0272.1B0272.1tbb-4123 XReverseView as cDNA map |
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Ensembl
B0302.1B0302.1a.1kin-25523 XForwardView as cDNA map |
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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25523 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25323 XForwardView as cDNA map |
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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0310.2B0310.2.1B0310.2123 XReverseView as cDNA map |
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B0310.2B0310.2.2B0310.2123 XReverseView as cDNA map |
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Ensembl
B0310.3B0310.3B0310.3223 XReverseView as cDNA map |
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Ensembl
B0344.2B0344.2wrt-9123 XForwardView as cDNA map |
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Ensembl
wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.2B0395.2mboa-1123 XForwardView as cDNA map |
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mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0395.3B0395.3.1B0395.3723 XReverseView as cDNA map |
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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3B0395.3.2B0395.3723 XReverseView as cDNA map |
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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2B0403.2ubc-17223 XForwardView as cDNA map |
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B0403.4B0403.4tag-320223 XReverseView as cDNA map |
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B0410.2B0410.2avang-1223 XForwardView as cDNA map |
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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2B0410.2bvang-1223 XForwardView as cDNA map |
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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0416.1B0416.1B0416.1923 XForwardView as cDNA map |
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B0416.2B0416.2B0416.2323 XForwardView as cDNA map |
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B0416.3B0416.3B0416.3123 XForwardView as cDNA map |
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B0416.5B0416.5aB0416.5123 XReverseView as cDNA map |
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B0416.6B0416.6gly-13123 XReverseView as cDNA map |
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gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0563.4B0563.4.1tmbi-4123 XForwardView as cDNA map |
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B0563.4B0563.4.2tmbi-4123 XForwardView as cDNA map |
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B0563.6B0563.6aB0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6b.1B0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6b.2B0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6cB0563.6223 XForwardView as cDNA map |
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C01C10.1C01C10.1clc-2123 XForwardView as cDNA map |
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clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase]
C01C4.3C01C4.3bC01C4.3123 XForwardView as cDNA map |
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C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1C02B4.1adt-1423 XForwardView as cDNA map |
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The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.4C02B4.4C02B4.4123 XReverseView as cDNA map |
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C02B8.2C02B8.2fbxc-38123 XForwardView as cDNA map |
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C02B8.3C02B8.3C02B8.3123 XForwardView as cDNA map |
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C02B8.5C02B8.5C02B8.5223 XReverseView as cDNA map |
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C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6C02B8.6C02B8.6223 XReverseView as cDNA map |
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C02C6.1C02C6.1adyn-1223 XForwardView as cDNA map |
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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1323 XForwardView as cDNA map |
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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.3C02C6.3aC02C6.3123 XReverseView as cDNA map |
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C02C6.3C02C6.3d.1C02C6.3123 XReverseView as cDNA map |
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C02C6.3C02C6.3d.2C02C6.3123 XReverseView as cDNA map |
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C02D4.1C02D4.1jud-4123 XForwardView as cDNA map |
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jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.4C02F12.4tag-52223 XReverseView as cDNA map |
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C02F12.7C02F12.7tag-278223 XReverseView as cDNA map |
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C02F12.8C02F12.8C02F12.8223 XReverseView as cDNA map |
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C02F12.9C02F12.9C02F12.9123 XForwardView as cDNA map |
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C02H7.1C02H7.1dyf-11123 XForwardView as cDNA map |
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dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]
C02H7.2C02H7.2npr-19123 XReverseView as cDNA map |
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C02H7.3C02H7.3aaex-3423 XReverseView as cDNA map |
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aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.2C03A3.2.1C03A3.2223 XForwardView as cDNA map |
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C03A3.2C03A3.2.2C03A3.2223 XForwardView as cDNA map |
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C03B1.12C03B1.12.1lmp-1223 XReverseView as cDNA map |
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lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.12C03B1.12.2lmp-1223 XReverseView as cDNA map |
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lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.13C03B1.13C03B1.13223 XReverseView as cDNA map |
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C03B1.3C03B1.3C03B1.3123 XForwardView as cDNA map |
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C03B1.5C03B1.5C03B1.5223 XForwardView as cDNA map |
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C03F11.1C03F11.1C03F11.1223 XForwardView as cDNA map |
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C03F11.2C03F11.2C03F11.2123 XReverseView as cDNA map |
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C03F11.3C03F11.3scav-1323 XReverseView as cDNA map |
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C03G5.11C03G5.11nspc-4123 XReverseView as cDNA map |
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C03G5.12C03G5.12nspc-5123 XForwardView as cDNA map |
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C03G5.13C03G5.13nspc-6123 XReverseView as cDNA map |
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C03G5.2C03G5.2nspc-7123 XForwardView as cDNA map |
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C03G5.9C03G5.9nspc-2123 XForwardView as cDNA map |
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C03H12.1C03H12.1C03H12.1323 XForwardView as cDNA map |
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C04A11.1C04A11.1C04A11.1223 XForwardView as cDNA map |
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C04A11.2C04A11.2C04A11.2123 XReverseView as cDNA map |
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C04A11.4C04A11.4adm-2323 XForwardView as cDNA map |
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adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
C04B4.2C04B4.2C04B4.2123 XForwardView as cDNA map |
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C04B4.4C04B4.4C04B4.4123 XForwardView as cDNA map |
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C04B4.6C04B4.6C04B4.6123 XReverseView as cDNA map |
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C04C11.1C04C11.1aC04C11.1123 XForwardView as cDNA map |
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C04C11.2C04C11.2.1arrd-25123 XForwardView as cDNA map |
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C04C11.2C04C11.2.2arrd-25123 XForwardView as cDNA map |
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C04E7.1C04E7.1C04E7.1223 XForwardView as cDNA map |
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C04E7.3C04E7.3C04E7.3123 XReverseView as cDNA map |
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C04F6.1C04F6.1vit-5123 XForwardView as cDNA map |
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vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent. by homology, VIT-5 is predicted to function as a lipid transport protein. loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth. VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. [Source: WormBase]
C04F6.3C04F6.3.1cht-1223 XReverseView as cDNA map |
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cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency). CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates. in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. [Source: WormBase]
C04F6.3C04F6.3.2cht-1223 XReverseView as cDNA map |
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cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency). CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates. in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. [Source: WormBase]
C04F6.4C04F6.4aunc-78123 XReverseView as cDNA map |
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The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils. [Source: WormBase]
C04F6.5C04F6.5dhs-27223 XReverseView as cDNA map |
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dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase]
C04F6.7C04F6.7C04F6.7123 XReverseView as cDNA map |
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C05A9.1C05A9.1apgp-5423 XReverseView as cDNA map |
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pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05A9.1C05A9.1bpgp-5423 XReverseView as cDNA map |
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pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05C9.3C05C9.3C05C9.3123 XReverseView as cDNA map |
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The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]
C05D9.3C05D9.3C05D9.3223 XForwardView as cDNA map |
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C05D9.5C05D9.5ife-4223 XForwardView as cDNA map |
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The ife-4 gene encodes a member of the Initiation Factor 4E (eIF4E) family. [Source: WormBase]
C05D9.7C05D9.7C05D9.7123 XReverseView as cDNA map |
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C05E11.1C05E11.1.1lnp-1123 XForwardView as cDNA map |
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lnp-1 encodes a highly conserved protein of unknown function, orthologous to human LUNAPARK/KIAA1715 (OMIM:610236), that is required for normally short body length, normal locomotion, fat content, acetylcholine neurotransmission, localization of RAB-3 and SNB-1, and sensitivity to aldicarb. LNP-1 is expressed in muscles, hypodermal cells, and neurons. within neurons, LNP-1 is localized to cell bodies, neuritic processes and commissures, and requiring UNC-104 for localization outside of cell bodies. LNP-1 is likely to act presynaptically. LNP-1 contains two N-terminal predicted transmembrane sequences, and an atypical zinc finger domain (C2HC2). [Source: WormBase]
C05E11.4C05E11.4amt-1123 XForwardView as cDNA map |
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amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C05E11.5C05E11.5amt-4223 XForwardView as cDNA map |
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amt-4 encodes a member of the ammonium transporter protein family. [Source: WormBase]
C05E11.7C05E11.7C05E11.7323 XReverseView as cDNA map |
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C05E11.8C05E11.8aflp-12223 XReverseView as cDNA map |
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flp-12 encodes a predicted FMRFamide-like peptide neurotransmitter that affects locomotion when injected into A. suum. expressed in the ASE and PVM sensory neurons. [Source: WormBase]
C05E11.8C05E11.8bflp-12123 XReverseView as cDNA map |
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flp-12 encodes a predicted FMRFamide-like peptide neurotransmitter that affects locomotion when injected into A. suum. expressed in the ASE and PVM sensory neurons. [Source: WormBase]
C05E7.1C05E7.1C05E7.1123 XReverseView as cDNA map |
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C05E7.2C05E7.2C05E7.2123 XReverseView as cDNA map |
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C05E7.3C05E7.3C05E7.3123 XReverseView as cDNA map |
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GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation