| Gene ID | Transcript ID | Common Gene Name | # of miRNA targets for specified miRNAs | Chromosome | Strand Direction | Transcript Link to view miRNA target predictions | Gene Link | Description |
|---|---|---|---|---|---|---|---|---|
| B0310.5 | B0310.5 | ugt-46 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0395.1 | B0395.1 | nhx-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase] |
| B0395.3 | B0395.3.1 | B0395.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase] |
| B0395.3 | B0395.3.2 | B0395.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase] |
| B0416.5 | B0416.5a | B0416.5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0416.6 | B0416.6 | gly-13 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase] |
| C02B4.1 | C02B4.1 | adt-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase] |
| C02F12.1 | C02F12.1a | tsp-17 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.1 | C02F12.1b | tsp-17 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.7 | C02F12.7 | tag-278 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.9 | C02F12.9 | C02F12.9 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C02H7.1 | C02H7.1 | dyf-11 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase] |
| C02H7.2 | C02H7.2 | npr-19 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C03A3.2 | C03A3.2.1 | C03A3.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03A3.2 | C03A3.2.2 | C03A3.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03H12.1 | C03H12.1 | C03H12.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04A11.4 | C04A11.4 | adm-2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase] |
| C04C11.2 | C04C11.2.1 | arrd-25 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04C11.2 | C04C11.2.2 | arrd-25 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04E7.2 | C04E7.2 | sor-3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | sor-3 encodes a novel protein that contains an MBT (malignant brain tumor) domain related to the MBT domains found in the Sex comb on midleg (SCM) and Sfmbt Polycomb group proteins. during development, SOR-3 activity is required to specify the correct number of dopaminergic and serotonergic neurons in males, as well as for proper ray neuron axon guidance, distal tip cell migration, and normal body size. SOR-3 activity is necessary for maintaining repression of Hox gene expression, notably that of egl-5 in many head neurons. in regulating neurotransmitter phenotype, sor-3 functions together with sop-2, which also encodes a Polycomb group protein, and members of the TGF-beta signaling pathway. sor-3 and sop-2 also function together to regulate progression through larval development. a SOR-3::GFP reporter fusion is expressed ubiquitously throughout the life cycle and localizes to both the cytoplasm and the nucleus. [Source: WormBase] |
| C04F6.1 | C04F6.1 | vit-5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent. by homology, VIT-5 is predicted to function as a lipid transport protein. loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth. VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. [Source: WormBase] |
| C05A9.1 | C05A9.1a | pgp-5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase] |
| C05A9.1 | C05A9.1b | pgp-5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase] |
| C05D9.4 | C05D9.4 | C05D9.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.9 | C05D9.9a | C05D9.9 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.9 | C05D9.9b | C05D9.9 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C05E11.7 | C05E11.7 | C05E11.7 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C05E7.4 | C05E7.4 | C05E7.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05G5.1 | C05G5.1 | C05G5.1 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C06G1.4 | C06G1.4.1 | ain-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase] |
| C06G1.4 | C06G1.4.2 | ain-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | ain-1 encodes an unfamiliar protein synergistically required, with LIN-31, for the normal timing of vulval differentiation, independently of LET-60/RAS, and parallel to or downstream of LIN-14/LIN-28/HBL-1. AIN-1 is expressed in cytoplasmic foci (that are probably P bodies) in several tissues, including vulval precursor cells and neurons. AIN-1 coimmunoprecipitates with DCR-1 and ALG-1, also binds ALG-1 in vitro, and does not require DNA or RNA for its binding. in vivo, AIN-1 targets ALG-1 to cytoplasmic foci, in which it colocalizes with DCAP-2. AIN-1 is likely to be a RISC component, since anti-AIN-1 antibodies precipitate 29 different miRNAs, including mir-2, mir-52, mir-58, mir-71, mir-77, and mir-239a. ain-1(ku322) mutants are essentially wild-type, except for sporadically gapped alae and excess seam cell nuclei arising from retarded seam cell fusion. more prominently, ain-1(ku322) suppresses the multivulva phenotype of lin-31(n1053) mutations, while strongly enhancing lin-31(n1053)'s egg-laying defect. the cellular basis of lin-31(n1053).ain-1(ku322) phenotypes is a delay in vulval development in L4 larvae not seen with either mutation alone. ain-1(ku322) has no effect on let-60(n1046) or lin-3(e1275) mutations. ain-1(ku322) suppresses the precocious vulval development of lin-14(RNAi), lin-28 mutants, and hbl-1(RNAi). alg-1 or alg-1 ain-1 mutant alae resemble ain-1 alae, indicating that ALG-1 and AIN-1 act in a common genetic pathway. AIN-1 is homologous to Brugia malayi 14748.m00068, 14052.m00191, and 14963.m01790, and paralogous to C. elegans B0041.2. AIN-1 and its nematode homologs have weak similarity to human TNRC6A (GW182. OMIM:610739) and Drosophila GAWKY. [Source: WormBase] |
| C07B5.4 | C07B5.4a.1 | C07B5.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C07B5.4 | C07B5.4a.2 | C07B5.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C07B5.4 | C07B5.4b.1 | C07B5.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C07B5.4 | C07B5.4b.2 | C07B5.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C09B7.1 | C09B7.1a | ser-7 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase] |
| C09B7.1 | C09B7.1b | ser-7 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase] |
| C09B7.1 | C09B7.1c | ser-7 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | ser-7 encodes an ortholog of mammalian 5-HT7 metabotropic serotonin receptors. SER-7 is required for stimulation of egg-laying or pharyngeal pumping by serotonin (5-HT), for regular pumping in response to bacteria, and probably also for 5-HT to activate MC neurons. SER-7 and SER-1 are redundantly required for normal egg-laying. SER-7 is expressed in head and tail neurons, pharyngeal neurons (M4, MCs, I2s, I3, M5, M3s, I4, I6, and M2s), vulval muscles, and intestine. heterologously expressed SER-7, when challenged with 5-HT, stimulates intracellular adenylate cyclase activity. SER-7 has high affinity for 5-HT and tryptamine, but not for 5-CT, and is unaffected by at least some agonists of mammalian 5-HT7 receptors. [Source: WormBase] |
| C09E10.2 | C09E10.2a | dgk-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase] |
| C09E10.2 | C09E10.2b | dgk-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase] |
| C09E10.2 | C09E10.2c | dgk-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase] |
| C09E10.2 | C09E10.2d | dgk-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase] |
| C09E10.2 | C09E10.2e | dgk-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dgk-1 encodes an ortholog of mammalian diacylglycerol kinase theta (DGKQ). dgk-1 activity functions downstream in a serotonin signaling pathway that regulates locomotion and synaptic transmission. in addition, dgk-1 activity negatively regulates egg laying. dgk-1 genetically interacts with the goa-1 and egl-30 signaling pathways. a GFP::DGK-1 reporter fusion protein is expressed in the excretory canals and in most neurons, including the ventral cord neurons. in neurons, GFP::DGK-1 localizes to axons and cell bodies. when expressed ectopically in HEK293 cells, DGK-1 exhibits DAG kinase activity. [Source: WormBase] |
| C09G1.2 | C09G1.2 | C09G1.2 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C10A4.1 | C10A4.1 | C10A4.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C10A4.8 | C10A4.8 | mnm-2 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C11G6.2 | C11G6.2 | C11G6.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C11G6.4 | C11G6.4a | nhr-28 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C11H1.5 | C11H1.5 | C11H1.5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C14A11.6 | C14A11.6 | C14A11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C15B12.2 | C15B12.2.1 | C15B12.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C15B12.2 | C15B12.2.2 | C15B12.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C15B12.4 | C15B12.4 | C15B12.4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C16B8.1 | C16B8.1.1 | lin-18 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | lin-18 encodes a predicted receptor tyrosine kinase that is a member of the Ryk/Derailed family of tyrosine kinase-related receptors (OMIM:600524, mutations in humans are associated with cleft palate). in C. elegans, LIN-18 is required for establishing the polarity of the secondary vulval cell lineage produced by the P7.p vulval precursor cell. LIN-18 may be a receptor for Wnt-like signaling molecules, and in vulval development appears to function independently of, but in parallel with, LIN-17, a Frizzled-like Wnt receptor, also required for proper orientation of the P7.p lineage. a lin-18 reporter gene is expressed in body wall muscle, neurons, and the developing vulva. in the vulva, expression is detected in P5.p, P6.p, and P7.p and all of their descendants during the L3 and L4 larval stages. [Source: WormBase] |
| C16B8.1 | C16B8.1.2 | lin-18 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | lin-18 encodes a predicted receptor tyrosine kinase that is a member of the Ryk/Derailed family of tyrosine kinase-related receptors (OMIM:600524, mutations in humans are associated with cleft palate). in C. elegans, LIN-18 is required for establishing the polarity of the secondary vulval cell lineage produced by the P7.p vulval precursor cell. LIN-18 may be a receptor for Wnt-like signaling molecules, and in vulval development appears to function independently of, but in parallel with, LIN-17, a Frizzled-like Wnt receptor, also required for proper orientation of the P7.p lineage. a lin-18 reporter gene is expressed in body wall muscle, neurons, and the developing vulva. in the vulva, expression is detected in P5.p, P6.p, and P7.p and all of their descendants during the L3 and L4 larval stages. [Source: WormBase] |
| C16E9.4 | C16E9.4a | inx-1 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase] |
| C16E9.4 | C16E9.4b | inx-1 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase] |
| C17H11.6 | C17H11.6a | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C17H11.6 | C17H11.6b | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C17H11.6 | C17H11.6c.1 | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C17H11.6 | C17H11.6c.2 | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C17H11.6 | C17H11.6c.3 | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C17H11.6 | C17H11.6d | C17H11.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C18B2.6 | C18B2.6 | C18B2.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C24A3.1 | C24A3.1 | C24A3.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C24H10.5 | C24H10.5 | cal-5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin. mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. [Source: WormBase] |
| C26G2.1 | C26G2.1 | syg-2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron. in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity. a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood. in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. [Source: WormBase] |
| C28G1.6 | C28G1.6 | C28G1.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C29F7.2 | C29F7.2 | C29F7.2 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C29F7.6 | C29F7.6 | C29F7.6 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | C29F7.6 encodes a putative histone H3 di/trimethyllysine-27 (H3K27me2/me3) demethylase. C29F7.6 contains a C-terminal JmjC domain, and is homologous to human JMJD3, UTX (OMIM:300128), and UTY (OMIM:400009). C29F7.6 is expected to antagonize transcriptional repression by polycomb repressor complexes, which mark stem cells (and presumably germline) by H3K27me3-mediated repression of somatic genes. however, C29F7.6 has no obvious function in mass RNAi assays. [Source: WormBase] |
| C30F2.1 | C30F2.1 | col-187 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C31E10.8 | C31E10.8 | tbc-19 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C31H2.4 | C31H2.4 | C31H2.4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | C31H2.4 encodes a possible 4-hydroxyphenylpyruvate dioxygenase, orthologous to human HPDL/GLOXD1, and paralogous to HPD-1 and human HPD (OMIM:609695, mutated in tyrosinemia type III). C31H2.4 has no obvious function in mass RNAi experiments. [Source: WormBase] |
| C33E10.10 | C33E10.10 | C33E10.10 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C33G3.1 | C33G3.1b.1 | dyc-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | dyc-1 encodes a homolog of murine CAPON, a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95. DYC-1 is expressed in muscle, and is required for a dystrophin-related function in muscle. [Source: WormBase] |
| C33G3.1 | C33G3.1b.2 | dyc-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | dyc-1 encodes a homolog of murine CAPON, a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95. DYC-1 is expressed in muscle, and is required for a dystrophin-related function in muscle. [Source: WormBase] |
| C33G3.4 | C33G3.4 | C33G3.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | C33G3.4 is orthologous to the human gene BETA-MANNOSIDASE (MANBA. OMIM:248510), which when mutated leads to disease. [Source: WormBase] |
| C33G3.6 | C33G3.6.1 | C33G3.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C34D10.2 | C34D10.2.1 | C34D10.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C34D10.2 | C34D10.2.2 | C34D10.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C34F6.10 | C34F6.10 | C34F6.10 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C34F6.1 | C34F6.1 | C34F6.1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C34H3.1 | C34H3.1 | tag-275 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C35C5.3 | C35C5.3b.1 | C35C5.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C35C5.6 | C35C5.6 | C35C5.6 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C36E6.1 | C36E6.1a | C36E6.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA. they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. [Source: WormBase] |
| C36E6.1 | C36E6.1b | C36E6.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | C36E6.1 encodes two proteins by alternative splicing, belonging to an ancient family of single-stranded nucleic acid-binding proteins, that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA. they are most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. [Source: WormBase] |
| C39B10.1 | C39B10.1 | C39B10.1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C39D10.3 | C39D10.3a | C39D10.3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C39D10.8 | C39D10.8a | C39D10.8 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C39D10.8 | C39D10.8b | C39D10.8 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C39D10.8 | C39D10.8c | C39D10.8 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C40H5.5 | C40H5.5a | ttx-3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ttx-3 encodes a LIM homeodomain protein required for functions of the interneuron AIY, including thermosensory behavior and olfactory learning. [Source: WormBase] |
| C40H5.5 | C40H5.5b.1 | ttx-3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ttx-3 encodes a LIM homeodomain protein required for functions of the interneuron AIY, including thermosensory behavior and olfactory learning. [Source: WormBase] |
| C40H5.5 | C40H5.5b.2 | ttx-3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ttx-3 encodes a LIM homeodomain protein required for functions of the interneuron AIY, including thermosensory behavior and olfactory learning. [Source: WormBase] |
| C41A3.1 | C41A3.1 | C41A3.1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C42D8.3 | C42D8.3 | pnk-4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C42D8.5 | C42D8.5a | acn-1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | acn-1 encodes an ACE-like protein required for larval development and adult morphogenesis, and probably for cell fusion in larval seam cells. ACN-1 lacks not only the HExxH consensus metallopeptidase motif, but also other active site residues found in the sequence HEAI/VxD of mammalian and insect ACEs. acn-1 is expressed in hypodermal cells, vulval precursor cells, and ray papillae in the male tail. the hypodermal expression of acn-1 appears to be controlled by nhr-23 and nhr-25. [Source: WormBase] |
| C44C10.9 | C44C10.9a | C44C10.9 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C44C10.9 | C44C10.9b | C44C10.9 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl |