microRNASeq

Gene ID	Transcript ID	Common Gene Name	# of miRNA targets for specified miRNAs	Chromosome	Strand Direction	Transcript Link to view miRNA target predictions	Gene Link	Description
AC8.10	AC8.10	AC8.10	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.11	AC8.11	AC8.11	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.12	AC8.12	AC8.12	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.3	AC8.3	AC8.3	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.4	AC8.4	AC8.4	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.7	AC8.7	AC8.7	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.1	AH9.1	AH9.1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.2	AH9.2	crn-4	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.1	B0198.1	tsp-20	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.2	B0198.2a	B0198.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.2	B0198.2b	B0198.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.3	B0198.3a	B0198.3	6	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.1	B0272.1	tbb-4	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.2	B0272.2	memb-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.3	B0272.3.1	B0272.3	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	B0272.3 encodes a 3-hydroxyacyl-CoA dehydrogenase. by homology, the product of B0272.3 is predicted to function in mitochondrial fatty acid metabolism by catalyzing the NAD+-dependent oxidation of short-chain hydroxyacyl CoAs. large-scale expression studies indicate that B0272.3 is widely expressed. [Source: WormBase]
B0272.3	B0272.3.2	B0272.3	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	B0272.3 encodes a 3-hydroxyacyl-CoA dehydrogenase. by homology, the product of B0272.3 is predicted to function in mitochondrial fatty acid metabolism by catalyzing the NAD+-dependent oxidation of short-chain hydroxyacyl CoAs. large-scale expression studies indicate that B0272.3 is widely expressed. [Source: WormBase]
B0272.4	B0272.4	B0272.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0294.1	B0294.1	B0294.1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0302.1	B0302.1a.1	kin-25	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1a.2	kin-25	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1b	kin-25	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0310.1	B0310.1b	B0310.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]
B0310.2	B0310.2.1	B0310.2	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.2	B0310.2.2	B0310.2	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.3	B0310.3	B0310.3	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.5	B0310.5	ugt-46	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0344.2	B0344.2	wrt-9	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.1	B0395.1	nhx-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.2	B0395.2	mboa-1	4	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0395.3	B0395.3.1	B0395.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3	B0395.3.2	B0395.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2	B0403.2	ubc-17	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.3	B0403.3	B0403.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.4	B0403.4	tag-320	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.5	B0403.5	B0403.5	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0410.1	B0410.1	B0410.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0410.2	B0410.2a	vang-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2	B0410.2b	vang-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0416.1	B0416.1	B0416.1	8	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.2	B0416.2	B0416.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.4	B0416.4	B0416.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.5	B0416.5a	B0416.5	6	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.5	B0416.5b	B0416.5	5	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.6	B0416.6	gly-13	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0416.7	B0416.7a	B0416.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.7	B0416.7b	B0416.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.1	B0563.1	B0563.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.2	B0563.2	tsp-11	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.4	B0563.4.1	tmbi-4	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.4	B0563.4.2	tmbi-4	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.7	B0563.7	B0563.7	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.8	B0563.8	B0563.8	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.2	C01C10.2a	C01C10.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.2	C01C10.2b	C01C10.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C4.1	C01C4.1	nlp-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction. NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine. the precise role of NLP-1 in nervous system function and development is not yet known. [Source: WormBase]
C01C4.2	C01C4.2	C01C4.2	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C01C4.3	C01C4.3b	C01C4.3	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1	C02B4.1	adt-1	7	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.2	C02B4.2	nhr-17	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase]
C02B4.3	C02B4.3	C02B4.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02B4.4	C02B4.4	C02B4.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02B8.3	C02B8.3	C02B8.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02B8.6	C02B8.6	C02B8.6	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02C6.1	C02C6.1a	dyn-1	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1	C02C6.1b	dyn-1	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.2	C02C6.2a	olrn-1	4	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2	C02C6.2b	olrn-1	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.3	C02C6.3a	C02C6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02D4.1	C02D4.1	jud-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]
C02D4.2	C02D4.2a	ser-2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2b	ser-2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2e	ser-2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2f	ser-2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02F12.1	C02F12.1b	tsp-17	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.3	C02F12.3.1	C02F12.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.3	C02F12.3.2	C02F12.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.4	C02F12.4	tag-52	6	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.5	C02F12.5	C02F12.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.7	C02F12.7	tag-278	17	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.8	C02F12.8	C02F12.8	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.9	C02F12.9	C02F12.9	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02H7.1	C02H7.1	dyf-11	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]
C02H7.2	C02H7.2	npr-19	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02H7.3	C02H7.3a	aex-3	5	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1	C03A3.1a	C03A3.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.1	C03A3.1b	C03A3.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.2	C03A3.2.1	C03A3.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.2	C03A3.2.2	C03A3.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.3	C03A3.3	C03A3.3	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.13	C03B1.13	C03B1.13	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.1	C03B1.1	C03B1.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.3	C03B1.3	C03B1.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.4	C03B1.4	C03B1.4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.6	C03B1.6b	C03B1.6	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.7	C03B1.7	C03B1.7	4	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.9	C03B1.9	C03B1.9	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.1	C03F11.1	C03F11.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.2	C03F11.2	C03F11.2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.3	C03F11.3	scav-1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.4	C03F11.4.1	C03F11.4	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl

Gene ID

Transcript ID

Common Gene Name

# of miRNA targets
for specified miRNAs

Chromosome

Strand Direction

Transcript Link to view miRNA target predictions

Gene Link

Description

AC8.10

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.11

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.12

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.7

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.2

crn-4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.1

tsp-20

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.2

B0198.2a

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.2

B0198.2b

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.3

B0198.3a

B0198.3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.1

tbb-4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.2

memb-1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.3

B0272.3.1

B0272.3

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.3 encodes a 3-hydroxyacyl-CoA dehydrogenase. by homology, the product of B0272.3 is predicted to function in mitochondrial fatty acid metabolism by catalyzing the NAD+-dependent oxidation of short-chain hydroxyacyl CoAs. large-scale expression studies indicate that B0272.3 is widely expressed. [Source: WormBase]

B0272.3

B0272.3.2

B0272.3

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0294.1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0302.1

B0302.1a.1

kin-25

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1a.2

kin-25

23 X

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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1b

kin-25

23 X

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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0310.1

B0310.1b

B0310.1

23 X

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B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]

B0310.2

B0310.2.1

B0310.2

23 X

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B0310.2

B0310.2.2

B0310.2

23 X

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B0310.3

23 X

Reverse

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B0310.5

ugt-46

23 X

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B0344.2

wrt-9

23 X

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wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]

B0395.1

nhx-1

23 X

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nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]

B0395.2

mboa-1

23 X

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mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]

B0395.3

B0395.3.1

B0395.3

23 X

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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]

B0395.3

B0395.3.2

B0395.3

23 X

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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]

B0403.2

ubc-17

23 X

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B0403.3

23 X

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B0403.4

tag-320

23 X

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B0403.5

23 X

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B0410.1

23 X

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B0410.2

B0410.2a

vang-1

23 X

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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]

B0410.2

B0410.2b

vang-1

23 X

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B0416.1

23 X

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B0416.2

23 X

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B0416.4

23 X

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B0416.5

B0416.5a

B0416.5

23 X

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B0416.5

B0416.5b

B0416.5

23 X

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B0416.6

gly-13

23 X

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gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]

B0416.7

B0416.7a

B0416.7

23 X

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B0416.7

B0416.7b

B0416.7

23 X

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B0563.1

23 X

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B0563.2

tsp-11

23 X

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B0563.4

B0563.4.1

tmbi-4

23 X

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B0563.4

B0563.4.2

tmbi-4

23 X

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B0563.7

23 X

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B0563.8

23 X

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C01C10.2

C01C10.2a

C01C10.2

23 X

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C01C10.2

C01C10.2b

C01C10.2

23 X

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C01C4.1

nlp-1

23 X

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nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction. NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine. the precise role of NLP-1 in nervous system function and development is not yet known. [Source: WormBase]

C01C4.2

23 X

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C01C4.3

C01C4.3b

C01C4.3

23 X

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C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]

C02B4.1

adt-1

23 X

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The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]

C02B4.2

nhr-17

23 X

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nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase]

C02B4.3

23 X

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C02B4.4

23 X

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C02B8.3

23 X

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C02B8.6

23 X

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C02C6.1

C02C6.1a

dyn-1

23 X

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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]

C02C6.1

C02C6.1b

dyn-1

23 X

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C02C6.2

C02C6.2a

olrn-1

23 X

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olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]

C02C6.2

C02C6.2b

olrn-1

23 X

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C02C6.3

C02C6.3a

C02C6.3

23 X

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C02D4.1

jud-4

23 X

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jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]

C02D4.2

C02D4.2a

ser-2

23 X

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ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]

C02D4.2

C02D4.2b

ser-2

23 X

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C02D4.2

C02D4.2e

ser-2

23 X

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C02D4.2

C02D4.2f

ser-2

23 X

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C02F12.1

C02F12.1b

tsp-17

23 X

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C02F12.3

C02F12.3.1

C02F12.3

23 X

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C02F12.3

C02F12.3.2

C02F12.3

23 X

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C02F12.4

tag-52

23 X

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C02F12.5

23 X

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C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]

C02F12.7

tag-278

23 X

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C02F12.8

23 X

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C02F12.9

23 X

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C02H7.1

dyf-11

23 X

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dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]

C02H7.2

npr-19

23 X

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C02H7.3

C02H7.3a

aex-3

23 X

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aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]

C03A3.1

C03A3.1a

C03A3.1

23 X

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C03A3.1

C03A3.1b

C03A3.1

23 X

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