Back to main page

Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-238-5p (MIMAT0015114)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


Please hold, your search is in progress...
TIP! If you show ALL results, you'll be able to dynamically sort by one or multiple columns (hold shift)
TIP! You can save this HTML file locally by going to File->Save As if you want to access it quickly later on


Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
AC8.10AC8.10AC8.10623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AC8.12AC8.12AC8.12123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
AC8.3AC8.3AC8.3623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AC8.7AC8.7AC8.7123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
AH9.1AH9.1AH9.1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AH9.2AH9.2crn-4223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AH9.4AH9.4AH9.4123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AH9.6AH9.6AH9.6123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]
B0198.1B0198.1tsp-20123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0198.3B0198.3aB0198.3223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0272.1B0272.1tbb-4223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0272.4B0272.4B0272.4223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0294.1B0294.1B0294.1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0302.1B0302.1a.1kin-25423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0310.2B0310.2.1B0310.2123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.2B0310.2.2B0310.2123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.3B0310.3B0310.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0310.5B0310.5ugt-46123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0395.1B0395.1nhx-1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.2B0395.2mboa-1423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0395.3B0395.3.1B0395.31023 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3B0395.3.2B0395.31023 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2B0403.2ubc-17323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0403.3B0403.3B0403.3223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0403.5B0403.5B0403.5223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0403.6B0403.6B0403.6223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0416.1B0416.1B0416.1423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.2B0416.2B0416.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.4B0416.4B0416.4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0416.5B0416.5aB0416.5223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0416.5B0416.5bB0416.5223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0416.6B0416.6gly-13123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0416.7B0416.7aB0416.7123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
B0563.1B0563.1B0563.1323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.2B0563.2tsp-11123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.4B0563.4.1tmbi-4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.4B0563.4.2tmbi-4123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6aB0563.6323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6b.1B0563.6323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6b.2B0563.6323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.6B0563.6cB0563.6323 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
B0563.7B0563.7B0563.7123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.1C01C10.1clc-2223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase]
C01C10.2C01C10.2aC01C10.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.2C01C10.2bC01C10.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.3C01C10.3.1acl-12423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C10.3C01C10.3.2acl-12423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C01C4.1C01C4.1nlp-1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction. NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine. the precise role of NLP-1 in nervous system function and development is not yet known. [Source: WormBase]
C01C4.2C01C4.2C01C4.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C01C4.3C01C4.3bC01C4.3123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1C02B4.1adt-1623 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.2C02B4.2nhr-17623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase]
C02B4.3C02B4.3C02B4.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02B4.4C02B4.4C02B4.4123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02B8.2C02B8.2fbxc-38223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02B8.5C02B8.5C02B8.5223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02C6.1C02C6.1adyn-1623 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1523 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.3C02C6.3aC02C6.3123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02D4.1C02D4.1jud-4223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]
C02D4.2C02D4.2aser-2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2bser-2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2eser-2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2fser-2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02F12.10C02F12.10C02F12.10123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.1C02F12.1atsp-17123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.1C02F12.1btsp-17123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.4C02F12.4tag-52423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.5C02F12.5C02F12.5123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.7C02F12.7tag-278223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.8C02F12.8C02F12.8623 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02F12.9C02F12.9C02F12.9123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C02H7.1C02H7.1dyf-11123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]
C02H7.2C02H7.2npr-19123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C02H7.3C02H7.3aaex-3423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1C03A3.1aC03A3.1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.1C03A3.1bC03A3.1123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.2C03A3.2.1C03A3.2223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.2C03A3.2.2C03A3.2223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03A3.3C03A3.3C03A3.3223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.12C03B1.12.1lmp-1423 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.12C03B1.12.2lmp-1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.13C03B1.13C03B1.13223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.14C03B1.14C03B1.14123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.1C03B1.1C03B1.1223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.2C03B1.2C03B1.2123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.3C03B1.3C03B1.3123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.5C03B1.5C03B1.5123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.6C03B1.6bC03B1.6223 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03B1.7C03B1.7C03B1.7423 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.2C03F11.2C03F11.2223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.3C03F11.3scav-1123 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.4C03F11.4.1C03F11.4223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.4C03F11.4.2C03F11.4323 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03F11.4C03F11.4.3C03F11.4323 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
C03G5.1C03G5.1.1sdha-1223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.1C03G5.1.2sdha-1223 XReverseView as cDNA map |
View as Table
Internal |
Ensembl
sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.2C03G5.2nspc-7123 XForwardView as cDNA map |
View as Table
Internal |
Ensembl
Please email us for questions and/or suggestions
GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation