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Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-4923a (MIMAT0020129)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
AH9.2AH9.2crn-4123 XReverseView as cDNA map |
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Ensembl
B0272.1B0272.1tbb-4123 XReverseView as cDNA map |
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Ensembl
B0294.1B0294.1B0294.1123 XReverseView as cDNA map |
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Ensembl
B0302.1B0302.1a.1kin-25123 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.5B0302.5B0302.5123 XReverseView as cDNA map |
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Ensembl
B0310.1B0310.1bB0310.1123 XForwardView as cDNA map |
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Ensembl
B0310.1 encodes a nematode-specific transmembrane protein. loss of B0310.1 activity via RNAi results in reduced fat content in wild-type and tub-1 mutant animals, suggesting that B0301.1 plays a role in lipid metabolism. [Source: WormBase]
B0395.2B0395.2mboa-1123 XForwardView as cDNA map |
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Ensembl
mboa-1 encodes a putative acyl-Coenzyme A:cholesterol ('sterol') O-acyltransferase, orthologous to human SOAT1 (OMIM:102642). MBOA-1 is required for normal locomotion and normally long lifespan in mass RNAi assays. mboa-1 is expressed in the seam cells and nervous systems of larvae and adults, and in the adult reproductive system. [Source: WormBase]
B0403.6B0403.6B0403.6123 XReverseView as cDNA map |
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Ensembl
B0416.6B0416.6gly-13223 XReverseView as cDNA map |
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Ensembl
gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
C01C10.3C01C10.3.1acl-12123 XReverseView as cDNA map |
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Ensembl
C01C10.3C01C10.3.2acl-12123 XReverseView as cDNA map |
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Ensembl
C02C6.1C02C6.1adyn-1123 XForwardView as cDNA map |
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Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1123 XForwardView as cDNA map |
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Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.3C02C6.3d.2C02C6.3123 XReverseView as cDNA map |
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Ensembl
C02F12.4C02F12.4tag-52123 XReverseView as cDNA map |
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Ensembl
C02F12.9C02F12.9C02F12.9123 XForwardView as cDNA map |
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Ensembl
C02H7.2C02H7.2npr-19123 XReverseView as cDNA map |
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C03B1.13C03B1.13C03B1.13123 XReverseView as cDNA map |
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C03F11.2C03F11.2C03F11.2223 XReverseView as cDNA map |
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Ensembl
C03F11.3C03F11.3scav-1223 XReverseView as cDNA map |
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Ensembl
C04E7.2C04E7.2sor-3123 XForwardView as cDNA map |
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Ensembl
sor-3 encodes a novel protein that contains an MBT (malignant brain tumor) domain related to the MBT domains found in the Sex comb on midleg (SCM) and Sfmbt Polycomb group proteins. during development, SOR-3 activity is required to specify the correct number of dopaminergic and serotonergic neurons in males, as well as for proper ray neuron axon guidance, distal tip cell migration, and normal body size. SOR-3 activity is necessary for maintaining repression of Hox gene expression, notably that of egl-5 in many head neurons. in regulating neurotransmitter phenotype, sor-3 functions together with sop-2, which also encodes a Polycomb group protein, and members of the TGF-beta signaling pathway. sor-3 and sop-2 also function together to regulate progression through larval development. a SOR-3::GFP reporter fusion is expressed ubiquitously throughout the life cycle and localizes to both the cytoplasm and the nucleus. [Source: WormBase]
C04F6.1C04F6.1vit-5223 XForwardView as cDNA map |
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Ensembl
vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent. by homology, VIT-5 is predicted to function as a lipid transport protein. loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth. VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. [Source: WormBase]
C05E11.5C05E11.5amt-4223 XForwardView as cDNA map |
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amt-4 encodes a member of the ammonium transporter protein family. [Source: WormBase]
C05G5.5C05G5.5C05G5.5123 XReverseView as cDNA map |
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C07A12.3C07A12.3anhr-35123 XForwardView as cDNA map |
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C07A12.4C07A12.4a.1pdi-2123 XForwardView as cDNA map |
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C07A12.4C07A12.4a.2pdi-2123 XForwardView as cDNA map |
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C07A12.4C07A12.4bpdi-2123 XForwardView as cDNA map |
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C08A9.9C08A9.9.1C08A9.9123 XReverseView as cDNA map |
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C08A9.9C08A9.9.2C08A9.9123 XReverseView as cDNA map |
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C09B8.8C09B8.8C09B8.8123 XForwardView as cDNA map |
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C10A4.1C10A4.1C10A4.1123 XForwardView as cDNA map |
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C10A4.5C10A4.5C10A4.5223 XForwardView as cDNA map |
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C10E2.5C10E2.5C10E2.5123 XReverseView as cDNA map |
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Ensembl
C10E2.6C10E2.6.1C10E2.6123 XReverseView as cDNA map |
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C11E4.6C11E4.6.1C11E4.6123 XForwardView as cDNA map |
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C11E4.6C11E4.6.2C11E4.6123 XForwardView as cDNA map |
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C12D12.1C12D12.1aC12D12.1123 XForwardView as cDNA map |
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C12D12.1C12D12.1cC12D12.1123 XForwardView as cDNA map |
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C14E2.5C14E2.5C14E2.5223 XReverseView as cDNA map |
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C14F11.6C14F11.6.1C14F11.6123 XReverseView as cDNA map |
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C14F11.6C14F11.6.2C14F11.6123 XReverseView as cDNA map |
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Ensembl
C14F5.4C14F5.4.1sfxn-2123 XReverseView as cDNA map |
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Ensembl
C14F5.4C14F5.4.2sfxn-2123 XReverseView as cDNA map |
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C14H10.4C14H10.4str-74123 XReverseView as cDNA map |
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C15A7.2C15A7.2C15A7.2123 XReverseView as cDNA map |
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Ensembl
C15C7.1C15C7.1.1syx-6123 XForwardView as cDNA map |
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Ensembl
C15C7.2C15C7.2.1klp-8123 XForwardView as cDNA map |
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Ensembl
klp-8 encodes an atypical kinesin-like motor protein with the motor domain in the N-terminus. the motor domain of KLP-8 exhibits poor homology to the globular motor domain of the kinesin heavy chain. [Source: WormBase]
C15H9.5C15H9.5.1C15H9.5123 XForwardView as cDNA map |
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Ensembl
C15H9.5C15H9.5.2C15H9.5123 XForwardView as cDNA map |
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Ensembl
C15H9.9C15H9.9.1C15H9.9123 XReverseView as cDNA map |
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Ensembl
C15H9.9C15H9.9.2C15H9.9123 XReverseView as cDNA map |
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Ensembl
C15H9.9C15H9.9.3C15H9.9123 XReverseView as cDNA map |
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Ensembl
C16E9.4C16E9.4ainx-1123 XReverseView as cDNA map |
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Ensembl
inx-1 encodes a predicted member of the innexin family. expressed in 4-6 anterior neurons. [Source: WormBase]
C17H11.2C17H11.2C17H11.2123 XForwardView as cDNA map |
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Ensembl
C18B12.2C18B12.2C18B12.2223 XForwardView as cDNA map |
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Ensembl
C18B12.2 encodes a G-protein-coupled receptor (GPCR) that is a member of the secretin family (also known as family B or family 2) of GPCRs. [Source: WormBase]
C18B12.3C18B12.3dsc-1123 XReverseView as cDNA map |
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Ensembl
C18B2.2C18B2.2C18B2.2123 XForwardView as cDNA map |
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C23F12.1C23F12.1afln-2223 XForwardView as cDNA map |
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C23F12.1C23F12.1bfln-2123 XForwardView as cDNA map |
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C23F12.1C23F12.1cfln-2123 XForwardView as cDNA map |
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C23F12.1C23F12.1dfln-2123 XForwardView as cDNA map |
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Ensembl
C23H4.1C23H4.1.1cab-1123 XReverseView as cDNA map |
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Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.2cab-1123 XReverseView as cDNA map |
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Ensembl
Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.3cab-1123 XReverseView as cDNA map |
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Ensembl
Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C23H4.1C23H4.1.4cab-1123 XReverseView as cDNA map |
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Ensembl
Novel protein which has a C-terminal motif weakly homologous to mouse NPDC-1 and is involved in synaptic regulation. it is expressed in various neurons including ventral cord and tail ganglion neurons. it physically interacts with AEX-3, which is a guanine nucleotide exchange factor for the Rab3 GTPase. [Source: WormBase]
C24A8.1C24A8.1dop-6123 XForwardView as cDNA map |
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Ensembl
dop-6 encodes an homolog of mammalian D2 or D3 dopamine receptors, and a paralog of DOP-2/-3. dop-6 is expressed in the nervous system. because of its paralogy, DOP-6 might act redundantly with DOP-2 to promote the basal slowing response to bacterial feeding, or it might account for the residual response to excess dopamine seen in triple dop-1/-2/-3 mutants. but dop-6 otherwise has no obvious function in RNAi assays of brood size, egg laying, pharyngeal pumping, locomotion, or male mating. [Source: WormBase]
C25A11.2C25A11.2.1C25A11.2123 XForwardView as cDNA map |
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Ensembl
C25A11.4C25A11.4aajm-1123 XForwardView as cDNA map |
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ajm-1 encodes a member of the apical junction molecule class that is required for correct elongation of the C. elegans embryo. AJM-1 contains a coiled-coil motif. AJM-1 binds DLG-1 in vitro, in yeast two-hybrid assays, and in vivo. AJM-1 is mislocalized in a dlg-1(RNAi) background. LET-413 is required for rapid confinement of DLG-1 and AJM-1 to a narrow apical region in C. elegans epithelia. CLC-1 colocalizes with AJM-1. vab-9 mutations enhance the adhesion defects of ajm-1 mutants. ajm-1 is expressed at the apical borders of all epithelia. [Source: WormBase]
C25A11.4C25A11.4dajm-1123 XForwardView as cDNA map |
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ajm-1 encodes a member of the apical junction molecule class that is required for correct elongation of the C. elegans embryo. AJM-1 contains a coiled-coil motif. AJM-1 binds DLG-1 in vitro, in yeast two-hybrid assays, and in vivo. AJM-1 is mislocalized in a dlg-1(RNAi) background. LET-413 is required for rapid confinement of DLG-1 and AJM-1 to a narrow apical region in C. elegans epithelia. CLC-1 colocalizes with AJM-1. vab-9 mutations enhance the adhesion defects of ajm-1 mutants. ajm-1 is expressed at the apical borders of all epithelia. [Source: WormBase]
C25B8.1C25B8.1akqt-1123 XForwardView as cDNA map |
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kqt-1 encodes one of three C. elegans KCNQ-like potassium channel subunits that, with respect to humans, is most similar to the KCNQ2-5 subfamily of channel proteins. although loss of KQT-1 activity via large-scale RNAi screens results in no obvious abnormalities, KQT-1 likely functions to regulate cellular excitability as expression of KQT-1 in Xenopus oocytes can produce K+ channel currents that functionally resemble vertebrate M-currents. activity of these KQT-1 channels can be suppressed by coexpression with the human M1 muscarinic receptor and treatment with diacylglycerol analogs. a KQT-1::GFP translational fusion is expressed in pharyngeal muscle cells, in the anterior and posterior mechanosensory neurons ALM and PLM, and in some head neurons. [Source: WormBase]
C25B8.1C25B8.1bkqt-1123 XForwardView as cDNA map |
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kqt-1 encodes one of three C. elegans KCNQ-like potassium channel subunits that, with respect to humans, is most similar to the KCNQ2-5 subfamily of channel proteins. although loss of KQT-1 activity via large-scale RNAi screens results in no obvious abnormalities, KQT-1 likely functions to regulate cellular excitability as expression of KQT-1 in Xenopus oocytes can produce K+ channel currents that functionally resemble vertebrate M-currents. activity of these KQT-1 channels can be suppressed by coexpression with the human M1 muscarinic receptor and treatment with diacylglycerol analogs. a KQT-1::GFP translational fusion is expressed in pharyngeal muscle cells, in the anterior and posterior mechanosensory neurons ALM and PLM, and in some head neurons. [Source: WormBase]
C25F6.2C25F6.2a.1dlg-1123 XForwardView as cDNA map |
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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2C25F6.2a.2dlg-1123 XForwardView as cDNA map |
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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2C25F6.2b.1dlg-1123 XForwardView as cDNA map |
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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2C25F6.2b.2dlg-1123 XForwardView as cDNA map |
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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C25F6.2C25F6.2b.3dlg-1123 XForwardView as cDNA map |
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dlg-1 encodes a MAGUK protein, orthologous to Drosophila disks large, that is physically located to adherens junctions in all epithelia and that is genetically required for organization of the embryonic gut epithelium into an coherent tube. [Source: WormBase]
C26B9.1C26B9.1aC26B9.1123 XForwardView as cDNA map |
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C26G2.1C26G2.1syg-2223 XForwardView as cDNA map |
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syg-2 encodes a transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-2 activity is required in vulval epithelial cells for proper synaptic specificity of the HSNL neuron. in regulating synapse formation, SYG-2 acts as a guidepost protein for the SYG-1 receptor that interacts with SYG-2 and acts within HSNL to regulate synaptic specificity. a SYG-2::GFP fusion protein is expressed in the primary vulval cell lineages beginning at the L3 larval stage, with expression increasing during the L4 stage and finally disappearing by adulthood. in embryos, SYG-2::GFP expression is detected in some head neurons and body wall muscles, the latter of which also express the reporter during the L1 and L2 larval stages. [Source: WormBase]
C28G1.4C28G1.4C28G1.4223 XReverseView as cDNA map |
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C28G1.5C28G1.5bC28G1.5123 XReverseView as cDNA map |
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C30G4.3C30G4.3gcy-11123 XReverseView as cDNA map |
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C31E10.6C31E10.6C31E10.6123 XForwardView as cDNA map |
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C33A11.4C33A11.4btag-97123 XReverseView as cDNA map |
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C33D12.1C33D12.1ceh-31123 XReverseView as cDNA map |
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ceh-31 encodes a protein containing a homeobox domain. [Source: WormBase]
C33D12.2C33D12.2C33D12.2123 XReverseView as cDNA map |
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C33D12.2 encodes a predicted transmembrane protein orthologous to human ACDP1-ACDP4 and S. cerevisiae MAM3, and paralogous to C01H6.6, C52D10.12, M02F4.3, R04E5.2, and R13G10.4. by orthology with MAM3, C33D12.2 may participate in metal homoeostasis. C33D12.2 is expressed in intestine, body wall muscle, nervous system (including ventral and dorsal nerve cords and head neurons), and adult vulval muscle and reproductive system. C33D12.2, MAM3, and ACDP1-ACDP4 belong to a family of proteins (sharing an ACD domain) from bacteria, yeast, plants, and metazoa. murine Acdp1 is a plasma membrane protein. bacterial proteins containing the ACD domain include CorC from Salmonella typhimurium, which is involved in magnesium and cobalt efflux. C33D12.2 has no obvious function in RNAi assays. [Source: WormBase]
C33D12.6C33D12.6tag-312123 XReverseView as cDNA map |
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C33D12.7C33D12.7ceh-30123 XForwardView as cDNA map |
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ceh-30 encodes a homeodomain protein most similar to Drosophila and mammalian BarH1 (OMIM:605211) which function in neuronal cell fate determination. the precise biological role of CEH-30 in C. elegans development and/or behavior is not yet known. [Source: WormBase]
C33E10.2C33E10.2fbxa-120123 XForwardView as cDNA map |
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This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. [Source: WormBase]
C33G3.1C33G3.1b.1dyc-1123 XForwardView as cDNA map |
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dyc-1 encodes a homolog of murine CAPON, a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95. DYC-1 is expressed in muscle, and is required for a dystrophin-related function in muscle. [Source: WormBase]
C33G3.1C33G3.1b.2dyc-1123 XForwardView as cDNA map |
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dyc-1 encodes a homolog of murine CAPON, a protein associated with neuronal nitric oxide synthase that regulates its interactions with PSD95. DYC-1 is expressed in muscle, and is required for a dystrophin-related function in muscle. [Source: WormBase]
C33G3.4C33G3.4C33G3.4123 XForwardView as cDNA map |
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C33G3.4 is orthologous to the human gene BETA-MANNOSIDASE (MANBA. OMIM:248510), which when mutated leads to disease. [Source: WormBase]
C33G3.5C33G3.5C33G3.5123 XReverseView as cDNA map |
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C34E11.3C34E11.3btag-241123 XForwardView as cDNA map |
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C34F6.1C34F6.1C34F6.1123 XReverseView as cDNA map |
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C34F6.7C34F6.7C34F6.7223 XReverseView as cDNA map |
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C35C5.1C35C5.1sdc-2223 XForwardView as cDNA map |
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The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation. [Source: WormBase]
C35C5.4C35C5.4mig-2123 XForwardView as cDNA map |
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mig-2 encodes a member of the Rho family of GTP-binding proteins that affects the migration of Q neuroblasts, HSN cells, and CAN cells as well as axon outgrowth and guidance. it is expressed in early embryos and expressed in adults in the vulva, distal tip cells of the gonad, and the sex myoblasts and their descendants. [Source: WormBase]
C35C5.5C35C5.5lev-8123 XForwardView as cDNA map |
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lev-8 encodes a novel nicotinic acetylcholine receptor (nAChR) alpha subunit that is a member of the ACR-8 group of nAChR subunits. LEV-8 activity is required for normal rates of pharyngeal pumping and for fully wild-type responses (increased egg laying and body wall muscle contraction) to the nAChR agonist and antihelmintic levamisole. expression of a LEV-8::GFP reporter construct begins at the L1 larval stage and is detected in neurons, body wall and uterine muscle cells, and socket cells of the IL and OL mechanosensory neurons. expression in body wall muscles is strongest in the anterior, consistent with increased levamisole resistance of head, or anterior, muscles seen in lev-8 mutant animals. [Source: WormBase]
C36B7.5C36B7.5aC36B7.5123 XReverseView as cDNA map |
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Ensembl
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We gratefully acknowledge support of this work by the William M. Keck Foundation