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Genome: Caenorhabditis Elegans | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v1.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: cel-miR-4932 (MIMAT0020138)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -21 | Min miRNA targets: 1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
AC8.10AC8.10AC8.10123 XReverseView as cDNA map |
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Ensembl
AC8.3AC8.3AC8.3123 XReverseView as cDNA map |
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Ensembl
AH9.1AH9.1AH9.1223 XReverseView as cDNA map |
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Ensembl
AH9.2AH9.2crn-4323 XReverseView as cDNA map |
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Ensembl
AH9.4AH9.4AH9.4123 XReverseView as cDNA map |
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Ensembl
B0198.2B0198.2aB0198.2123 XForwardView as cDNA map |
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Ensembl
B0198.2B0198.2bB0198.2123 XForwardView as cDNA map |
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Ensembl
B0198.3B0198.3aB0198.3323 XReverseView as cDNA map |
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Ensembl
B0272.1B0272.1tbb-4223 XReverseView as cDNA map |
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Ensembl
B0272.2B0272.2memb-1123 XReverseView as cDNA map |
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Ensembl
B0294.1B0294.1B0294.1123 XReverseView as cDNA map |
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Ensembl
B0294.3B0294.3B0294.3123 XForwardView as cDNA map |
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Ensembl
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]
B0302.1B0302.1a.1kin-25323 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1a.2kin-25323 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1B0302.1bkin-25323 XForwardView as cDNA map |
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Ensembl
kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.2B0302.2B0302.2123 XForwardView as cDNA map |
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Ensembl
B0310.2B0310.2.1B0310.2223 XReverseView as cDNA map |
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Ensembl
B0310.2B0310.2.2B0310.2223 XReverseView as cDNA map |
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Ensembl
B0310.5B0310.5ugt-46123 XReverseView as cDNA map |
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Ensembl
B0310.6B0310.6B0310.6123 XReverseView as cDNA map |
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Ensembl
B0344.2B0344.2wrt-9223 XForwardView as cDNA map |
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Ensembl
wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.1B0395.1nhx-1123 XForwardView as cDNA map |
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Ensembl
nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.3B0395.3.1B0395.3323 XReverseView as cDNA map |
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Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3B0395.3.2B0395.3223 XReverseView as cDNA map |
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Ensembl
B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2B0403.2ubc-17323 XForwardView as cDNA map |
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Ensembl
B0403.3B0403.3B0403.3123 XReverseView as cDNA map |
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Ensembl
B0403.4B0403.4tag-320523 XReverseView as cDNA map |
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Ensembl
B0410.1B0410.1B0410.1123 XForwardView as cDNA map |
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Ensembl
B0410.2B0410.2avang-1123 XForwardView as cDNA map |
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Ensembl
vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2B0410.2bvang-1123 XForwardView as cDNA map |
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Ensembl
vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.3B0410.3B0410.3323 XReverseView as cDNA map |
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Ensembl
B0416.1B0416.1B0416.1523 XForwardView as cDNA map |
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Ensembl
B0416.2B0416.2B0416.2123 XForwardView as cDNA map |
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B0416.3B0416.3B0416.3123 XForwardView as cDNA map |
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B0416.5B0416.5aB0416.5323 XReverseView as cDNA map |
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B0416.5B0416.5bB0416.5123 XReverseView as cDNA map |
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B0563.4B0563.4.1tmbi-4423 XForwardView as cDNA map |
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B0563.4B0563.4.2tmbi-4423 XForwardView as cDNA map |
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B0563.6B0563.6aB0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6b.1B0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6b.2B0563.6223 XForwardView as cDNA map |
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B0563.6B0563.6cB0563.6223 XForwardView as cDNA map |
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B0563.7B0563.7B0563.7123 XReverseView as cDNA map |
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C01C10.2C01C10.2aC01C10.2123 XReverseView as cDNA map |
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C01C10.2C01C10.2bC01C10.2123 XReverseView as cDNA map |
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C01C10.3C01C10.3.1acl-12423 XReverseView as cDNA map |
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C01C10.3C01C10.3.2acl-12323 XReverseView as cDNA map |
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C01C4.2C01C4.2C01C4.2223 XForwardView as cDNA map |
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Ensembl
C01C4.3C01C4.3bC01C4.3123 XForwardView as cDNA map |
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Ensembl
C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1C02B4.1adt-1423 XForwardView as cDNA map |
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Ensembl
The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.2C02B4.2nhr-17123 XReverseView as cDNA map |
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Ensembl
nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase]
C02B8.4C02B8.4hlh-8123 XForwardView as cDNA map |
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Ensembl
The hlh-8 gene encodes a helix-loop-helix protein required for normal muscle development, and hence for normal defecation and egg-laying. [Source: WormBase]
C02B8.5C02B8.5C02B8.5123 XReverseView as cDNA map |
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Ensembl
C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6C02B8.6C02B8.6223 XReverseView as cDNA map |
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Ensembl
C02C6.1C02C6.1adyn-11023 XForwardView as cDNA map |
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Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1C02C6.1bdyn-1923 XForwardView as cDNA map |
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Ensembl
dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.2C02C6.2aolrn-1323 XForwardView as cDNA map |
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Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2C02C6.2bolrn-1123 XForwardView as cDNA map |
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Ensembl
olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.3C02C6.3aC02C6.3323 XReverseView as cDNA map |
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Ensembl
C02C6.3C02C6.3bC02C6.3223 XReverseView as cDNA map |
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Ensembl
C02C6.3C02C6.3cC02C6.3123 XReverseView as cDNA map |
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C02C6.3C02C6.3d.1C02C6.3123 XReverseView as cDNA map |
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C02C6.3C02C6.3d.2C02C6.3223 XReverseView as cDNA map |
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Ensembl
C02D4.2C02D4.2aser-2123 XReverseView as cDNA map |
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Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2bser-2123 XReverseView as cDNA map |
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Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2eser-2123 XReverseView as cDNA map |
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Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2C02D4.2fser-2123 XReverseView as cDNA map |
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Ensembl
ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02F12.1C02F12.1atsp-17123 XForwardView as cDNA map |
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C02F12.1C02F12.1btsp-17123 XForwardView as cDNA map |
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C02F12.3C02F12.3.1C02F12.3223 XReverseView as cDNA map |
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Ensembl
C02F12.3C02F12.3.2C02F12.3223 XReverseView as cDNA map |
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Ensembl
C02F12.3C02F12.3.3C02F12.3123 XReverseView as cDNA map |
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C02F12.4C02F12.4tag-52123 XReverseView as cDNA map |
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C02F12.5C02F12.5C02F12.5123 XReverseView as cDNA map |
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C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.7C02F12.7tag-278523 XReverseView as cDNA map |
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Ensembl
C02F12.8C02F12.8C02F12.8223 XReverseView as cDNA map |
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C02H7.2C02H7.2npr-19123 XReverseView as cDNA map |
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C02H7.3C02H7.3aaex-3523 XReverseView as cDNA map |
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aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1C03A3.1aC03A3.1223 XForwardView as cDNA map |
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C03A3.1C03A3.1bC03A3.1223 XForwardView as cDNA map |
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C03A3.2C03A3.2.1C03A3.2323 XForwardView as cDNA map |
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C03A3.2C03A3.2.2C03A3.2223 XForwardView as cDNA map |
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C03B1.12C03B1.12.1lmp-1223 XReverseView as cDNA map |
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lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.12C03B1.12.2lmp-1223 XReverseView as cDNA map |
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lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.4C03B1.4C03B1.4123 XForwardView as cDNA map |
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C03B1.9C03B1.9C03B1.9223 XReverseView as cDNA map |
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C03F11.1C03F11.1C03F11.1123 XForwardView as cDNA map |
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C03F11.2C03F11.2C03F11.2123 XReverseView as cDNA map |
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C03F11.3C03F11.3scav-1323 XReverseView as cDNA map |
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C03G5.10C03G5.10nspc-3123 XForwardView as cDNA map |
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C03G5.11C03G5.11nspc-4123 XReverseView as cDNA map |
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C03G5.1C03G5.1.1sdha-1323 XReverseView as cDNA map |
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sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.1C03G5.1.2sdha-1323 XReverseView as cDNA map |
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sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase]
C03G5.2C03G5.2nspc-7223 XForwardView as cDNA map |
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C03G5.8C03G5.8nspc-1223 XReverseView as cDNA map |
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C03H12.1C03H12.1C03H12.1123 XForwardView as cDNA map |
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C04A11.1C04A11.1C04A11.1223 XForwardView as cDNA map |
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C04A11.2C04A11.2C04A11.2123 XReverseView as cDNA map |
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C04A11.3C04A11.3gck-4123 XForwardView as cDNA map |
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C04A11.4C04A11.4adm-2523 XForwardView as cDNA map |
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adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase]
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GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation