microRNASeq

Gene ID	Transcript ID	Common Gene Name	# of miRNA targets for specified miRNAs	Chromosome	Strand Direction	Transcript Link to view miRNA target predictions	Gene Link	Description
AC8.10	AC8.10	AC8.10	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.12	AC8.12	AC8.12	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.3	AC8.3	AC8.3	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AC8.7	AC8.7	AC8.7	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.1	AH9.1	AH9.1	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.2	AH9.2	crn-4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.4	AH9.4	AH9.4	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
AH9.6	AH9.6	AH9.6	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]
B0198.2	B0198.2a	B0198.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.2	B0198.2b	B0198.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0198.3	B0198.3a	B0198.3	6	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.1	B0272.1	tbb-4	5	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0272.4	B0272.4	B0272.4	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0294.3	B0294.3	B0294.3	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]
B0302.1	B0302.1a.1	kin-25	6	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1a.2	kin-25	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.1	B0302.1b	kin-25	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]
B0302.4	B0302.4	B0302.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.2	B0310.2.1	B0310.2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.2	B0310.2.2	B0310.2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.3	B0310.3	B0310.3	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0310.5	B0310.5	ugt-46	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0344.2	B0344.2	wrt-9	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]
B0395.1	B0395.1	nhx-1	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]
B0395.3	B0395.3.1	B0395.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0395.3	B0395.3.2	B0395.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]
B0403.2	B0403.2	ubc-17	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.3	B0403.3	B0403.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.4	B0403.4	tag-320	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0403.5	B0403.5	B0403.5	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0410.2	B0410.2a	vang-1	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0410.2	B0410.2b	vang-1	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]
B0416.1	B0416.1	B0416.1	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.2	B0416.2	B0416.2	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.3	B0416.3	B0416.3	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.5	B0416.5a	B0416.5	3	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.5	B0416.5b	B0416.5	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.6	B0416.6	gly-13	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]
B0416.7	B0416.7a	B0416.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0416.7	B0416.7b	B0416.7	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.2	B0563.2	tsp-11	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.4	B0563.4.1	tmbi-4	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.4	B0563.4.2	tmbi-4	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.6	B0563.6a	B0563.6	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.6	B0563.6b.1	B0563.6	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.6	B0563.6b.2	B0563.6	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.6	B0563.6c	B0563.6	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
B0563.8	B0563.8	B0563.8	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.2	C01C10.2a	C01C10.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.2	C01C10.2b	C01C10.2	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.3	C01C10.3.1	acl-12	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.3	C01C10.3.2	acl-12	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C01C10.4	C01C10.4	clc-5	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]
C01C4.1	C01C4.1	nlp-1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction. NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine. the precise role of NLP-1 in nervous system function and development is not yet known. [Source: WormBase]
C01C4.2	C01C4.2		2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C01C4.3	C01C4.3b	C01C4.3	8	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]
C02B4.1	C02B4.1	adt-1	9	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]
C02B4.3	C02B4.3	C02B4.3	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02B4.4	C02B4.4	C02B4.4	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02B8.1	C02B8.1.1	C02B8.1	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02B8.1	C02B8.1.2	C02B8.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02B8.5	C02B8.5	C02B8.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]
C02B8.6	C02B8.6		1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02C6.1	C02C6.1a	dyn-1	7	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.1	C02C6.1b	dyn-1	7	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]
C02C6.2	C02C6.2a	olrn-1	5	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.2	C02C6.2b	olrn-1	4	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]
C02C6.3	C02C6.3a	C02C6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02C6.3	C02C6.3b	C02C6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02C6.3	C02C6.3d.1	C02C6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02C6.3	C02C6.3d.2	C02C6.3	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02D4.1	C02D4.1	jud-4	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]
C02D4.2	C02D4.2a	ser-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2b	ser-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2e	ser-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02D4.2	C02D4.2f	ser-2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]
C02F12.10	C02F12.10	C02F12.10	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.4	C02F12.4	tag-52	7	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.5	C02F12.5	C02F12.5	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]
C02F12.7	C02F12.7	tag-278	16	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.8	C02F12.8	C02F12.8	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02F12.9	C02F12.9	C02F12.9	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C02H7.1	C02H7.1	dyf-11	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl	dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]
C02H7.2	C02H7.2	npr-19	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C02H7.3	C02H7.3a	aex-3	11	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]
C03A3.1	C03A3.1a	C03A3.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.1	C03A3.1b	C03A3.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.2	C03A3.2.1	C03A3.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03A3.2	C03A3.2.2	C03A3.2	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.12	C03B1.12.1	lmp-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.12	C03B1.12.2	lmp-1	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl	lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]
C03B1.13	C03B1.13	C03B1.13	2	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.1	C03B1.1	C03B1.1	1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.2	C03B1.2		1	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.4	C03B1.4	C03B1.4	3	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.5	C03B1.5	C03B1.5	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03B1.7	C03B1.7	C03B1.7	7	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.1	C03F11.1	C03F11.1	2	23 X	Forward	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.2	C03F11.2	C03F11.2	1	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl
C03F11.3	C03F11.3	scav-1	4	23 X	Reverse	View as cDNA map \| View as Table	Internal \| Ensembl

Gene ID

Transcript ID

Common Gene Name

# of miRNA targets
for specified miRNAs

Chromosome

Strand Direction

Transcript Link to view miRNA target predictions

Gene Link

Description

AC8.10

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.12

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AC8.7

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.1

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.2

crn-4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.6

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase]

B0198.2

B0198.2a

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.2

B0198.2b

B0198.2

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0198.3

B0198.3a

B0198.3

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.1

tbb-4

23 X

Reverse

View as cDNA map |
View as Table

Internal |
Ensembl

B0272.4

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

B0294.3

23 X

Forward

View as cDNA map |
View as Table

Internal |
Ensembl

This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. [Source: WormBase]

B0302.1

B0302.1a.1

kin-25

23 X

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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1a.2

kin-25

23 X

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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.1

B0302.1b

kin-25

23 X

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kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase]

B0302.4

23 X

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B0310.2

B0310.2.1

B0310.2

23 X

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B0310.2

B0310.2.2

B0310.2

23 X

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B0310.3

23 X

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B0310.5

ugt-46

23 X

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B0344.2

wrt-9

23 X

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wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase]

B0395.1

nhx-1

23 X

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nhx-1 encodes a sodium/proton exchanger expressed intracellularly within hypodermal and muscle cells. NHX-1 is required for embryonic viability, and is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. [Source: WormBase]

B0395.3

B0395.3.1

B0395.3

23 X

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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]

B0395.3

B0395.3.2

B0395.3

23 X

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B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase]

B0403.2

ubc-17

23 X

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B0403.3

23 X

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B0403.4

tag-320

23 X

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B0403.5

23 X

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B0410.2

B0410.2a

vang-1

23 X

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vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]

B0410.2

B0410.2b

vang-1

23 X

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B0416.1

23 X

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B0416.2

23 X

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B0416.3

23 X

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B0416.5

B0416.5a

B0416.5

23 X

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B0416.5

B0416.5b

B0416.5

23 X

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B0416.6

gly-13

23 X

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gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase]

B0416.7

B0416.7a

B0416.7

23 X

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B0416.7

B0416.7b

B0416.7

23 X

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B0563.2

tsp-11

23 X

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B0563.4

B0563.4.1

tmbi-4

23 X

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B0563.4

B0563.4.2

tmbi-4

23 X

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B0563.6

B0563.6a

B0563.6

23 X

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B0563.6

B0563.6b.1

B0563.6

23 X

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B0563.6

B0563.6b.2

B0563.6

23 X

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B0563.6

B0563.6c

B0563.6

23 X

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B0563.8

23 X

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C01C10.2

C01C10.2a

C01C10.2

23 X

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C01C10.2

C01C10.2b

C01C10.2

23 X

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C01C10.3

C01C10.3.1

acl-12

23 X

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C01C10.3

C01C10.3.2

acl-12

23 X

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C01C10.4

clc-5

23 X

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clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]

C01C4.1

nlp-1

23 X

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nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction. NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine. the precise role of NLP-1 in nervous system function and development is not yet known. [Source: WormBase]

C01C4.2

23 X

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C01C4.3

C01C4.3b

C01C4.3

23 X

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C01C4.3 encodes a serine/threonine protein kinase. [Source: WormBase]

C02B4.1

adt-1

23 X

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The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase]

C02B4.3

23 X

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C02B4.4

23 X

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C02B8.1

C02B8.1.1

C02B8.1

23 X

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C02B8.1

C02B8.1.2

C02B8.1

23 X

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C02B8.5

23 X

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C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase]

C02B8.6

23 X

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C02C6.1

C02C6.1a

dyn-1

23 X

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dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase]

C02C6.1

C02C6.1b

dyn-1

23 X

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C02C6.2

C02C6.2a

olrn-1

23 X

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olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase]

C02C6.2

C02C6.2b

olrn-1

23 X

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C02C6.3

C02C6.3a

C02C6.3

23 X

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C02C6.3

C02C6.3b

C02C6.3

23 X

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C02C6.3

C02C6.3d.1

C02C6.3

23 X

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C02C6.3

C02C6.3d.2

C02C6.3

23 X

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C02D4.1

jud-4

23 X

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jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase]

C02D4.2

C02D4.2a

ser-2

23 X

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ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase]

C02D4.2

C02D4.2b

ser-2

23 X

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C02D4.2

C02D4.2e

ser-2

23 X

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C02D4.2

C02D4.2f

ser-2

23 X

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C02F12.10

23 X

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C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase]

C02F12.4

tag-52

23 X

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C02F12.5

23 X

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C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase]

C02F12.7

tag-278

23 X

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C02F12.8

23 X

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C02F12.9

23 X

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C02H7.1

dyf-11

23 X

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dyf-11 encodes a conserved protein orthologous to the human microtubule-binding protein MIP-T3 and that contains a lysine-rich region and a C-terminal coiled-coil domain present in a number of intraflagellar transport (IFT) complex B proteins. DYF-11 activity is required continuously in sensory neurons for formation of medial and distal ciliary segments and thus, for normal sensory cilium morphology and function and chemotaxis. a dyf-11::gfp promoter fusion is expressed in all ciliated sensory neurons as well as in the AQR, PQR, ADE, and PDR neurons. a DYF-11::GFP protein fusion is detected throughout the cilium and appears to localize to IFT-B particles in a manner consistent with an early role in IFT-B particle assembly. dyf-11 expression in ciliated neurons is dependent upon the presence of the DAF-19 RFX transcription factor. [Source: WormBase]

C02H7.2

npr-19

23 X

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C02H7.3

C02H7.3a

aex-3

23 X

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aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase]

C03A3.1

C03A3.1a

C03A3.1

23 X

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C03A3.1

C03A3.1b

C03A3.1

23 X

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C03A3.2

C03A3.2.1

C03A3.2

23 X

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C03A3.2

C03A3.2.2

C03A3.2

23 X

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C03B1.12

C03B1.12.1

lmp-1

23 X

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lmp-1 encodes a protein with similarity to vertebrate lysosome-associated membrane proteins CD68, and appears to be the only protein in C. elegans that has a GYXX (phi) vertebrate lysosomal targeting sequence at its carboxy terminus. localized to the periphery of a large population of membrane bound organelles (granules) seen throughout the early embryos and restricted to the cells of the intestine during later stages. [Source: WormBase]

C03B1.12

C03B1.12.2

lmp-1

23 X

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C03B1.13

23 X

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