| Gene ID | Transcript ID | Common Gene Name | # of miRNA targets for specified miRNAs | Chromosome | Strand Direction | Transcript Link to view miRNA target predictions | Gene Link | Description |
|---|---|---|---|---|---|---|---|---|
| AH9.1 | AH9.1 | AH9.1 | 3 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| AH9.2 | AH9.2 | crn-4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| AH9.4 | AH9.4 | AH9.4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| AH9.6 | AH9.6 | AH9.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | AH9.6 encodes a novel protein that contains two predicted transmembrane domains and that is conserved in other nematode species. [Source: WormBase] |
| B0198.1 | B0198.1 | tsp-20 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0198.3 | B0198.3a | B0198.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0272.1 | B0272.1 | tbb-4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0272.3 | B0272.3.1 | B0272.3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | B0272.3 encodes a 3-hydroxyacyl-CoA dehydrogenase. by homology, the product of B0272.3 is predicted to function in mitochondrial fatty acid metabolism by catalyzing the NAD+-dependent oxidation of short-chain hydroxyacyl CoAs. large-scale expression studies indicate that B0272.3 is widely expressed. [Source: WormBase] |
| B0272.3 | B0272.3.2 | B0272.3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | B0272.3 encodes a 3-hydroxyacyl-CoA dehydrogenase. by homology, the product of B0272.3 is predicted to function in mitochondrial fatty acid metabolism by catalyzing the NAD+-dependent oxidation of short-chain hydroxyacyl CoAs. large-scale expression studies indicate that B0272.3 is widely expressed. [Source: WormBase] |
| B0272.4 | B0272.4 | B0272.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0294.1 | B0294.1 | B0294.1 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0302.1 | B0302.1a.1 | kin-25 | 6 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase] |
| B0302.1 | B0302.1a.2 | kin-25 | 6 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase] |
| B0302.1 | B0302.1b | kin-25 | 5 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | kin-25 encodes a nonreceptor tyrosine kinase that is a member of the Ack subfamily of cytoplasmic tyrosine kinases. [Source: WormBase] |
| B0302.4 | B0302.4 | B0302.4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0310.3 | B0310.3 | B0310.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0344.2 | B0344.2 | wrt-9 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | wrt-9 encodes a hedgehog-like protein, with an N-terminal signal sequence, a Wart domain, and a C-terminal region of proline-rich, low-complexity sequence. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-9 has no obvious function in RNAi assays. [Source: WormBase] |
| B0395.3 | B0395.3.1 | B0395.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase] |
| B0395.3 | B0395.3.2 | B0395.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | B0395.3 is orthologous to the human gene CHOLINE ACETYLTRANSFERASE ISOFORM R (CHAT. OMIM:118490), which when mutated leads to disease. [Source: WormBase] |
| B0403.2 | B0403.2 | ubc-17 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0403.4 | B0403.4 | tag-320 | 3 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0403.5 | B0403.5 | B0403.5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0403.6 | B0403.6 | B0403.6 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0410.2 | B0410.2a | vang-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] |
| B0410.2 | B0410.2b | vang-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | vang-1 encodes an ortholog of Drosophila VAN GOGH (also known as STRABISMUS). VANG-1 enables Wnt-directed planar cell polarity. VANG-1 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] |
| B0416.1 | B0416.1 | B0416.1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0416.4 | B0416.4 | B0416.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0416.5 | B0416.5a | B0416.5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0416.6 | B0416.6 | gly-13 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | gly-13 encodes an experimentally verified UDP-N-acetylglucosamine alpha-3-D-mannoside beta-1,2-N-acetylglucosaminyltransferase I (GnT I), that is the primary GnT I enzyme in vivo, and that can act on unusual substrates. gly-13 is expressed throughout development in many cell types. gly-13 has no obvious function in vivo, since a deletion allele of gly-13 is phenotypically normal even as a double or triple mutant with gly-12 and gly-14. [Source: WormBase] |
| B0416.7 | B0416.7a | B0416.7 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0416.7 | B0416.7b | B0416.7 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.1 | B0563.1 | B0563.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.2 | B0563.2 | tsp-11 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.6 | B0563.6a | B0563.6 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.6 | B0563.6b.1 | B0563.6 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.6 | B0563.6b.2 | B0563.6 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| B0563.6 | B0563.6c | B0563.6 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C01C10.1 | C01C10.1 | clc-2 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase] |
| C01C10.3 | C01C10.3.1 | acl-12 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C01C10.4 | C01C10.4 | clc-5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | clc-5 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-5 is worm-specific, with obvious homologs only in C. elegans. CLC-5 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] |
| C02B4.1 | C02B4.1 | adt-1 | 5 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | The adt-1 gene encodes a metalloproteinase with disintegrin-like and metalloproteinase with thrombospondin type I motifs (ADAMTS) that is required for male tail morphogenesis. [Source: WormBase] |
| C02B4.2 | C02B4.2 | nhr-17 | 3 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | nhr-17 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators. nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. [Source: WormBase] |
| C02B4.3 | C02B4.3 | C02B4.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02B8.5 | C02B8.5 | C02B8.5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | C02B8.5 encodes a homolog of the functionally active Fmrf Receptor (FR. CG2114) of D. melanogaster. it is thus possible that C02B8.5 is a receptor for one of the FMRF-like neurotransmitters in C. elegans (e.g., FLP-1 through FLP-12). [Source: WormBase] |
| C02C6.1 | C02C6.1a | dyn-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase] |
| C02C6.1 | C02C6.1b | dyn-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | dyn-1 encodes the C. elegans ortholog of the dynamin GTPase. dyn-1 activity is required for endocytosis, synaptic vesicle recycling, cytokinesis, and the CED-1 pathway that regulates engulfment and degradation of apoptotic cells. mutations in dyn-1 affect locomotion, egg-laying, defecation, and embryonic development, indicating that dyn-1's endocytic function is required for a number of diverse processes. dyn-1 reporter fusion constructs are expressed in motor neurons, intestinal cells, and pharyngeal muscle. [Source: WormBase] |
| C02C6.2 | C02C6.2a | olrn-1 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase] |
| C02C6.2 | C02C6.2b | olrn-1 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food. OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616. while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs. OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement. OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol. by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. [Source: WormBase] |
| C02C6.3 | C02C6.3a | C02C6.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02D4.1 | C02D4.1 | jud-4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | jud-4 encodes an unfamiliar protein, putatively secreted, that is required both for normal sensitivity to ethanol and for survival after freezing and thawing. JUD-4 is expressed in hypodermis and vulval muscles. JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacks obvious orthologies to non-nematode proteins. JUD-4's C-terminal domain has possible similarity to F40E10.5, and to proteins such as human HOMER1. jud-4(ys18) mutants show delayed sensitivity to ethanol levels that rapidly paralyze normal worms, but do not survive freezing and rethawing as does wild-type. JUD-4 has no obvious function in mass RNAi assays. [Source: WormBase] |
| C02D4.2 | C02D4.2a | ser-2 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase] |
| C02D4.2 | C02D4.2b | ser-2 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase] |
| C02D4.2 | C02D4.2e | ser-2 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase] |
| C02D4.2 | C02D4.2f | ser-2 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | ser-2 encodes at least four tyramine 7-transmembrane domain receptors (GPCRs), by alternative splicing from three different promoters, that have distinct but partially overlapping expression patterns. ser-2 has at least three alternative promoters that drive SER-2 expression in a set of sensory, inter- and motor neurons (e.g., AIY, AIZ, and RIA) adding up to ~10% of all neurons in the nervous system, as well as pharyngeal cells and head muscles. the deletion ser-2(pk1397) has no obvious mutant phenotype. LIM-4 is required for SER-2 expression, and MAB-23 is required for SER-2 expression at normally high levels. [Source: WormBase] |
| C02F12.10 | C02F12.10 | C02F12.10 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | C02F12.10 encodes a homeobox protein of uncertain affinity, but with some similarity to vertebrate Hox3 proteins and the D. melanogster homeobox protein ROUGH. C02F12.10 is expressed in a single tail neuron of hermaphrodites from late embryo to adult stages, as well as in a uterus cell separate from the vulva (perhaps in the spermetheca). C02F12.10 has no obvious function in mass RNAi assays. [Source: WormBase] |
| C02F12.1 | C02F12.1a | tsp-17 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.1 | C02F12.1b | tsp-17 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.4 | C02F12.4 | tag-52 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.5 | C02F12.5 | C02F12.5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | C02F12.5 encodes a putatively secreted protein with a Kunitz/bovine pancreatic trypsin inhibitor domain. C02F12.5 has no obvious function in mass RNAi assays. [Source: WormBase] |
| C02F12.7 | C02F12.7 | tag-278 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02F12.8 | C02F12.8 | C02F12.8 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02H7.2 | C02H7.2 | npr-19 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C02H7.3 | C02H7.3a | aex-3 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | aex-3 encodes a guanine nucleotide exchange factor for the rab-3 GTPase that is orthologous to human MAP kinase activating protein containing death domain (MADD, OMIM:603584). AEX-3 is required for intracellular vesicle trafficking as well as synaptic vesicle release and interacts with CAB-1 and RAB-3 to regulate separate pathways for neural activities such as defecation and male mating, respectively. AEX-3 is also required for egg laying and locomotion. AEX-3 is expressed in nearly all neurons. [Source: WormBase] |
| C03A3.2 | C03A3.2.1 | C03A3.2 | 5 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03A3.2 | C03A3.2.2 | C03A3.2 | 5 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03B1.13 | C03B1.13 | C03B1.13 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C03B1.1 | C03B1.1 | C03B1.1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03B1.4 | C03B1.4 | C03B1.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03B1.5 | C03B1.5 | C03B1.5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C03F11.4 | C03F11.4.1 | C03F11.4 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C03G5.1 | C03G5.1.1 | sdha-1 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase] |
| C03G5.1 | C03G5.1.2 | sdha-1 | 2 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | sdha-1 is orthologous to the human gene SUCCINATE DEHYDROGENASE COMPLEX, SUBUNIT A, FLAVOPROTEIN (SDHA. OMIM:600857), which when mutated leads to complex II mitochondrial respiratory chain deficiency presenting as Leigh syndrome. [Source: WormBase] |
| C03H12.1 | C03H12.1 | C03H12.1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04A11.3 | C04A11.3 | gck-4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04A11.4 | C04A11.4 | adm-2 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | adm-2 encodes a protein containing a snake venom disintegrin-domain and a metalloprotease-like domain (i.e., a protein of the ADAM family). like ADM-1, ADM-2 is homologous to a mammalian sperm glycoprotein (PH-30/fertilin) implicated in sperm-egg fusion, and ADM-2 might thus be a fusogenic protein mediating the merging of plasma membranes during development. [Source: WormBase] |
| C04A11.5 | C04A11.5.1 | C04A11.5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04A11.5 | C04A11.5.2 | C04A11.5 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04B4.2 | C04B4.2 | C04B4.2 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04B4.4 | C04B4.4 | C04B4.4 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04C11.1 | C04C11.1a | C04C11.1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04C11.2 | C04C11.2.1 | arrd-25 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04C11.2 | C04C11.2.2 | arrd-25 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C04E7.2 | C04E7.2 | sor-3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | sor-3 encodes a novel protein that contains an MBT (malignant brain tumor) domain related to the MBT domains found in the Sex comb on midleg (SCM) and Sfmbt Polycomb group proteins. during development, SOR-3 activity is required to specify the correct number of dopaminergic and serotonergic neurons in males, as well as for proper ray neuron axon guidance, distal tip cell migration, and normal body size. SOR-3 activity is necessary for maintaining repression of Hox gene expression, notably that of egl-5 in many head neurons. in regulating neurotransmitter phenotype, sor-3 functions together with sop-2, which also encodes a Polycomb group protein, and members of the TGF-beta signaling pathway. sor-3 and sop-2 also function together to regulate progression through larval development. a SOR-3::GFP reporter fusion is expressed ubiquitously throughout the life cycle and localizes to both the cytoplasm and the nucleus. [Source: WormBase] |
| C04E7.3 | C04E7.3 | C04E7.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C04F6.1 | C04F6.1 | vit-5 | 5 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent. by homology, VIT-5 is predicted to function as a lipid transport protein. loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth. VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. [Source: WormBase] |
| C04F6.3 | C04F6.3.1 | cht-1 | 4 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency). CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates. in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. [Source: WormBase] |
| C04F6.3 | C04F6.3.2 | cht-1 | 3 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | cht-1 encodes a chitinase orthologous to human chitinase-1 (OMIM:600031, mutations are associated with chitotriosidase deficiency). CHT-1 is predicted to function as an extracellular O-glycosyl hydrolase that hydrolyzes the glycosidic bond between two or more carbohydrates. in C. elegans, CHT-1 may play a role in embryogenesis, and may also be required for cuticle degradation during molting and degradation of chitin-containing pathogens as part of a host defense mechanism. [Source: WormBase] |
| C04F6.4 | C04F6.4a | unc-78 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | The unc-78 gene encodes a homolog of actin-interacting protein 1 (AIP1) that regulates the ordered assembly of actin and cofilin in myofibrils. [Source: WormBase] |
| C04F6.5 | C04F6.5 | dhs-27 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | dhs-27 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] |
| C04F6.7 | C04F6.7 | C04F6.7 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C05A9.1 | C05A9.1a | pgp-5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase] |
| C05A9.1 | C05A9.1b | pgp-5 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | pgp-5 encodes a transmembrane protein that is a member of the P-glycoprotein subclass of the ATP-binding cassette (ABC) transporter superfamily. by homology, PGP-5 is predicted to function as an ATP-dependent efflux pump that protects C. elegans by exporting exogenous toxins. however, as loss of pgp-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of PGP-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase] |
| C05C9.3 | C05C9.3 | C05C9.3 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] |
| C05D9.1 | C05D9.1.1 | snx-1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.1 | C05D9.1.2 | snx-1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.1 | C05D9.1.3 | snx-1 | 2 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.3 | C05D9.3 | C05D9.3 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | |
| C05D9.7 | C05D9.7 | C05D9.7 | 1 | 23 X | Reverse | View as cDNA map | View as Table | Internal | Ensembl | |
| C05E11.1 | C05E11.1.1 | lnp-1 | 3 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | lnp-1 encodes a highly conserved protein of unknown function, orthologous to human LUNAPARK/KIAA1715 (OMIM:610236), that is required for normally short body length, normal locomotion, fat content, acetylcholine neurotransmission, localization of RAB-3 and SNB-1, and sensitivity to aldicarb. LNP-1 is expressed in muscles, hypodermal cells, and neurons. within neurons, LNP-1 is localized to cell bodies, neuritic processes and commissures, and requiring UNC-104 for localization outside of cell bodies. LNP-1 is likely to act presynaptically. LNP-1 contains two N-terminal predicted transmembrane sequences, and an atypical zinc finger domain (C2HC2). [Source: WormBase] |
| C05E11.4 | C05E11.4 | amt-1 | 1 | 23 X | Forward | View as cDNA map | View as Table | Internal | Ensembl | amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase] |