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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-1a-3p (MIMAT0000123)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001138ENSMUST00000001166Cnnm311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
ENSMUSG00000004031ENSMUST00000004133Fam5b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 5, member B [Source:MGI Symbol;Acc:MGI:2443333]
ENSMUSG00000005674ENSMUST00000005817Tomm40l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocase of outer mitochondrial membrane 40 homolog-like (yeast) [Source:MGI Symbol;Acc:MGI:3589112]
ENSMUSG00000005674ENSMUST00000111327Tomm40l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocase of outer mitochondrial membrane 40 homolog-like (yeast) [Source:MGI Symbol;Acc:MGI:3589112]
ENSMUSG00000005763ENSMUST00000161971Cd24711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD247 antigen [Source:MGI Symbol;Acc:MGI:88334]
ENSMUSG00000005886ENSMUST00000006037Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000068304Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000081713Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000006005ENSMUST00000064506Tpr11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
translocated promoter region [Source:MGI Symbol;Acc:MGI:1922066]
ENSMUSG00000006005ENSMUST00000119161Tpr11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
translocated promoter region [Source:MGI Symbol;Acc:MGI:1922066]
ENSMUSG00000007097ENSMUST00000085913Atp1a211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Na+/K+ transporting, alpha 2 polypeptide [Source:MGI Symbol;Acc:MGI:88106]
ENSMUSG00000009418ENSMUST00000040599Nav111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neuron navigator 1 [Source:MGI Symbol;Acc:MGI:2183683]
ENSMUSG00000016494ENSMUST00000016638Cd3411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD34 antigen [Source:MGI Symbol;Acc:MGI:88329]
ENSMUSG00000016494ENSMUST00000110815Cd3411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD34 antigen [Source:MGI Symbol;Acc:MGI:88329]
ENSMUSG00000018417ENSMUST00000018561Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000046390Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000114537Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000114541Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000025949ENSMUST00000097707Pikfyve11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphoinositide kinase, FYVE finger containing [Source:MGI Symbol;Acc:MGI:1335106]
ENSMUSG00000025959ENSMUST00000114086Klf711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Kruppel-like factor 7 (ubiquitous) [Source:MGI Symbol;Acc:MGI:1935151]
ENSMUSG00000025978ENSMUST00000027121Rftn211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
raftlin family member 2 [Source:MGI Symbol;Acc:MGI:1921263]
ENSMUSG00000026012ENSMUST00000027165Cd2811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD28 antigen [Source:MGI Symbol;Acc:MGI:88327]
ENSMUSG00000026035ENSMUST00000081677Ppil311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylprolyl isomerase (cyclophilin)-like 3 [Source:MGI Symbol;Acc:MGI:1917475]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026088ENSMUST00000139725Mitd111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MIT, microtubule interacting and transport, domain containing 1 [Source:MGI Symbol;Acc:MGI:1916278]
ENSMUSG00000026100ENSMUST00000027269Mstn11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
myostatin [Source:MGI Symbol;Acc:MGI:95691]
ENSMUSG00000026135ENSMUST00000113737Zfp14211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger protein 142 [Source:MGI Symbol;Acc:MGI:1924514]
ENSMUSG00000026156ENSMUST00000063663B3gat221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:MGI Symbol;Acc:MGI:2389490]
ENSMUSG00000026172ENSMUST00000027358Bcs1l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
BCS1-like (yeast) [Source:MGI Symbol;Acc:MGI:1914071]
ENSMUSG00000026173ENSMUST00000027362Plcd411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phospholipase C, delta 4 [Source:MGI Symbol;Acc:MGI:107469]
ENSMUSG00000026173ENSMUST00000113749Plcd411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phospholipase C, delta 4 [Source:MGI Symbol;Acc:MGI:107469]
ENSMUSG00000026185ENSMUST00000027377Igfbp511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
ENSMUSG00000026201ENSMUST00000027401Stk1611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 16 [Source:MGI Symbol;Acc:MGI:1313271]
ENSMUSG00000026283ENSMUST00000027505Ing511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inhibitor of growth family, member 5 [Source:MGI Symbol;Acc:MGI:1922816]
ENSMUSG00000026288ENSMUST00000042275Inpp5d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-5-phosphatase D [Source:MGI Symbol;Acc:MGI:107357]
ENSMUSG00000026288ENSMUST00000072999Inpp5d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-5-phosphatase D [Source:MGI Symbol;Acc:MGI:107357]
ENSMUSG00000026288ENSMUST00000168783Inpp5d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-5-phosphatase D [Source:MGI Symbol;Acc:MGI:107357]
ENSMUSG00000026288ENSMUST00000169754Inpp5d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-5-phosphatase D [Source:MGI Symbol;Acc:MGI:107357]
ENSMUSG00000026288ENSMUST00000170300Inpp5d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-5-phosphatase D [Source:MGI Symbol;Acc:MGI:107357]
ENSMUSG00000026312ENSMUST00000027542Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000112701Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000172005Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026341ENSMUST00000027579Actr311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ARP3 actin-related protein 3 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1921367]
ENSMUSG00000026361ENSMUST00000018337Cdc7321ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2384876]
ENSMUSG00000026374ENSMUST00000027623Tsn11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translin [Source:MGI Symbol;Acc:MGI:109263]
ENSMUSG00000026383ENSMUST00000052404Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026383ENSMUST00000163147Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026390ENSMUST00000027639Marco11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
ENSMUSG00000026409ENSMUST00000050406Pfkfb211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Source:MGI Symbol;Acc:MGI:107815]
ENSMUSG00000026413ENSMUST00000027667Pkp121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
ENSMUSG00000026413ENSMUST00000163260Pkp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
ENSMUSG00000026442ENSMUST00000043189Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026442ENSMUST00000094569Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026458ENSMUST00000168515Ppfia411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 [Source:MGI Symbol;Acc:MGI:1915757]
ENSMUSG00000026463ENSMUST00000143567Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
ENSMUSG00000026463ENSMUST00000165602Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
ENSMUSG00000026469ENSMUST00000027741Xpr111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
xenotropic and polytropic retrovirus receptor 1 [Source:MGI Symbol;Acc:MGI:97932]
ENSMUSG00000026475ENSMUST00000027748Rgs1611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 16 [Source:MGI Symbol;Acc:MGI:108407]
ENSMUSG00000026484ENSMUST00000076110Rnf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ring finger protein 2 [Source:MGI Symbol;Acc:MGI:1101759]
ENSMUSG00000026509ENSMUST00000068505Capn211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
ENSMUSG00000026526ENSMUST00000027810Fh111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
fumarate hydratase 1 [Source:MGI Symbol;Acc:MGI:95530]
ENSMUSG00000026532ENSMUST00000027817Spna111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
spectrin alpha 1 [Source:MGI Symbol;Acc:MGI:98385]
ENSMUSG00000026546ENSMUST00000085894Ccdc1911ForwardView as cDNA map |
View as Table
Internal |
Ensembl
coiled-coil domain containing 19 [Source:MGI Symbol;Acc:MGI:1919120]
ENSMUSG00000026547ENSMUST00000111230Tagln221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transgelin 2 [Source:MGI Symbol;Acc:MGI:1312985]
ENSMUSG00000026553ENSMUST00000074152Copa11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
coatomer protein complex subunit alpha [Source:MGI Symbol;Acc:MGI:1334462]
ENSMUSG00000026567ENSMUST00000027852Adcy1021ForwardView as cDNA map |
View as Table
Internal |
Ensembl
adenylate cyclase 10 [Source:MGI Symbol;Acc:MGI:2660854]
ENSMUSG00000026584ENSMUST00000027876Scyl311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SCY1-like 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1921385]
ENSMUSG00000026584ENSMUST00000161908Scyl311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SCY1-like 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1921385]
ENSMUSG00000026584ENSMUST00000170359Scyl311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SCY1-like 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1921385]
ENSMUSG00000026609ENSMUST00000027905Ush2a31ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026609ENSMUST00000060479Ush2a31ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026618ENSMUST00000027921Iars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
ENSMUSG00000026628ENSMUST00000027941Atf311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
activating transcription factor 3 [Source:MGI Symbol;Acc:MGI:109384]
ENSMUSG00000026667ENSMUST00000027979Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026667ENSMUST00000150821Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026675ENSMUST00000027989Hsd17b711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hydroxysteroid (17-beta) dehydrogenase 7 [Source:MGI Symbol;Acc:MGI:1330808]
ENSMUSG00000026678ENSMUST00000027997Rgs511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 5 [Source:MGI Symbol;Acc:MGI:1098434]
ENSMUSG00000026687ENSMUST00000028004Aldh9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
aldehyde dehydrogenase 9, subfamily A1 [Source:MGI Symbol;Acc:MGI:1861622]
ENSMUSG00000026705ENSMUST00000111611Klhl2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 20 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444855]
ENSMUSG00000028033ENSMUST00000115300Kcnq511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily Q, member 5 [Source:MGI Symbol;Acc:MGI:1924937]
ENSMUSG00000031506ENSMUST00000049449Ptpn711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, non-receptor type 7 [Source:MGI Symbol;Acc:MGI:2156893]
ENSMUSG00000031506ENSMUST00000167080Ptpn711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, non-receptor type 7 [Source:MGI Symbol;Acc:MGI:2156893]
ENSMUSG00000032883ENSMUST00000035779Acsl311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
ENSMUSG00000032883ENSMUST00000142704Acsl311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
ENSMUSG00000032997ENSMUST00000079205Chpf11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
chondroitin polymerizing factor [Source:MGI Symbol;Acc:MGI:106576]
ENSMUSG00000033124ENSMUST00000040689Atg9a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 9A (yeast) [Source:MGI Symbol;Acc:MGI:2138446]
ENSMUSG00000033257ENSMUST00000042125Ttll421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tubulin tyrosine ligase-like family, member 4 [Source:MGI Symbol;Acc:MGI:1914784]
ENSMUSG00000033276ENSMUST00000042446Stk3611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 36 (fused homolog, Drosophila) [Source:MGI Symbol;Acc:MGI:1920831]
ENSMUSG00000033276ENSMUST00000087183Stk3611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 36 (fused homolog, Drosophila) [Source:MGI Symbol;Acc:MGI:1920831]
ENSMUSG00000033276ENSMUST00000087186Stk3611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 36 (fused homolog, Drosophila) [Source:MGI Symbol;Acc:MGI:1920831]
ENSMUSG00000033276ENSMUST00000113699Stk3611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 36 (fused homolog, Drosophila) [Source:MGI Symbol;Acc:MGI:1920831]
ENSMUSG00000033276ENSMUST00000148456Stk3611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 36 (fused homolog, Drosophila) [Source:MGI Symbol;Acc:MGI:1920831]
ENSMUSG00000033845ENSMUST00000156816Mrpl1511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mitochondrial ribosomal protein L15 [Source:MGI Symbol;Acc:MGI:1351639]
ENSMUSG00000033952ENSMUST00000053364Aspm11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
asp (abnormal spindle)-like, microcephaly associated (Drosophila) [Source:MGI Symbol;Acc:MGI:1334448]
ENSMUSG00000035131ENSMUST00000074622Fam5c11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 5, member C [Source:MGI Symbol;Acc:MGI:2443035]
ENSMUSG00000036086ENSMUST00000037426Zranb311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, RAN-binding domain containing 3 [Source:MGI Symbol;Acc:MGI:1918362]
ENSMUSG00000036086ENSMUST00000086614Zranb311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, RAN-binding domain containing 3 [Source:MGI Symbol;Acc:MGI:1918362]
ENSMUSG00000036086ENSMUST00000112539Zranb311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, RAN-binding domain containing 3 [Source:MGI Symbol;Acc:MGI:1918362]
ENSMUSG00000036104ENSMUST00000037649Rab3gap111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RAB3 GTPase activating protein subunit 1 [Source:MGI Symbol;Acc:MGI:2445001]
ENSMUSG00000036251ENSMUST00000040210Trpm811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily M, member 8 [Source:MGI Symbol;Acc:MGI:2181435]
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We gratefully acknowledge support of this work by the William M. Keck Foundation