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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-99a-5p (MIMAT0000131)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001138ENSMUST00000001166Cnnm311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
ENSMUSG00000005338ENSMUST00000111220Cadm311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cell adhesion molecule 3 [Source:MGI Symbol;Acc:MGI:2137858]
ENSMUSG00000006301ENSMUST00000016309Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006301ENSMUST00000113796Tmbim121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000014602ENSMUST00000168448Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171556Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171796Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000015843ENSMUST00000015987Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111380Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111384Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111386Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000018417ENSMUST00000018561Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000046390Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000114537Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000018417ENSMUST00000114541Myo1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myosin IB [Source:MGI Symbol;Acc:MGI:107752]
ENSMUSG00000025774ENSMUST00000026876Crisp411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein 4 [Source:MGI Symbol;Acc:MGI:1925331]
ENSMUSG00000025774ENSMUST00000115340Crisp411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein 4 [Source:MGI Symbol;Acc:MGI:1925331]
ENSMUSG00000025774ENSMUST00000115344Crisp411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein 4 [Source:MGI Symbol;Acc:MGI:1925331]
ENSMUSG00000025911ENSMUST00000144177Adhfe111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
alcohol dehydrogenase, iron containing, 1 [Source:MGI Symbol;Acc:MGI:1923437]
ENSMUSG00000025921ENSMUST00000027053Rdh1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinol dehydrogenase 10 (all-trans) [Source:MGI Symbol;Acc:MGI:1924238]
ENSMUSG00000025930ENSMUST00000027062Msc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
musculin [Source:MGI Symbol;Acc:MGI:1333884]
ENSMUSG00000025969ENSMUST00000027112Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000063594Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000075144Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000102822Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114155Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114157Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025980ENSMUST00000027123Hspd121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
heat shock protein 1 (chaperonin) [Source:MGI Symbol;Acc:MGI:96242]
ENSMUSG00000026000ENSMUST00000027149Lancl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
LanC (bacterial lantibiotic synthetase component C)-like 1 [Source:MGI Symbol;Acc:MGI:1336997]
ENSMUSG00000026000ENSMUST00000113979Lancl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
LanC (bacterial lantibiotic synthetase component C)-like 1 [Source:MGI Symbol;Acc:MGI:1336997]
ENSMUSG00000026029ENSMUST00000027189Casp821ForwardView as cDNA map |
View as Table
Internal |
Ensembl
caspase 8 [Source:MGI Symbol;Acc:MGI:1261423]
ENSMUSG00000026029ENSMUST00000165549Casp811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
caspase 8 [Source:MGI Symbol;Acc:MGI:1261423]
ENSMUSG00000026036ENSMUST00000064224Nif3l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Ngg1 interacting factor 3-like 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1929485]
ENSMUSG00000026036ENSMUST00000087521Nif3l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Ngg1 interacting factor 3-like 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1929485]
ENSMUSG00000026036ENSMUST00000114337Nif3l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Ngg1 interacting factor 3-like 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1929485]
ENSMUSG00000026036ENSMUST00000171597Nif3l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Ngg1 interacting factor 3-like 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1929485]
ENSMUSG00000026043ENSMUST00000087883Col3a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
ENSMUSG00000026047ENSMUST00000065767Kdelc111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:MGI Symbol;Acc:MGI:1919300]
ENSMUSG00000026068ENSMUST00000027237Il18rap11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 18 receptor accessory protein [Source:MGI Symbol;Acc:MGI:1338888]
ENSMUSG00000026110ENSMUST00000042161Mgat4a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mannoside acetylglucosaminyltransferase 4, isoenzyme A [Source:MGI Symbol;Acc:MGI:2662992]
ENSMUSG00000026110ENSMUST00000151952Mgat4a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mannoside acetylglucosaminyltransferase 4, isoenzyme A [Source:MGI Symbol;Acc:MGI:2662992]
ENSMUSG00000026113ENSMUST00000168546Inpp4a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol polyphosphate-4-phosphatase, type I [Source:MGI Symbol;Acc:MGI:1931123]
ENSMUSG00000026131ENSMUST00000097785Dst21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026131ENSMUST00000097786Dst11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026147ENSMUST00000054588Col9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026147ENSMUST00000084261Col9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026147ENSMUST00000115252Col9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026153ENSMUST00000027337Fam135a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 135, member A [Source:MGI Symbol;Acc:MGI:1915437]
ENSMUSG00000026153ENSMUST00000097806Fam135a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 135, member A [Source:MGI Symbol;Acc:MGI:1915437]
ENSMUSG00000026167ENSMUST00000006718Wnt10a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
wingless related MMTV integration site 10a [Source:MGI Symbol;Acc:MGI:108071]
ENSMUSG00000026175ENSMUST00000027366Vil111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
ENSMUSG00000026209ENSMUST00000171858Dnpep11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aspartyl aminopeptidase [Source:MGI Symbol;Acc:MGI:1278328]
ENSMUSG00000026255ENSMUST00000027472Efhd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1921607]
ENSMUSG00000026255ENSMUST00000118687Efhd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
EF hand domain containing 1 [Source:MGI Symbol;Acc:MGI:1921607]
ENSMUSG00000026274ENSMUST00000027493Pask11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
PAS domain containing serine/threonine kinase [Source:MGI Symbol;Acc:MGI:2155936]
ENSMUSG00000026275ENSMUST00000027494Ppp1r711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein phosphatase 1, regulatory (inhibitor) subunit 7 [Source:MGI Symbol;Acc:MGI:1913635]
ENSMUSG00000026308ENSMUST00000027533Klhl3011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 30 (Drosophila) [Source:MGI Symbol;Acc:MGI:1918038]
ENSMUSG00000026311ENSMUST00000027538Asb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ankyrin repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1929735]
ENSMUSG00000026311ENSMUST00000163232Asb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ankyrin repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1929735]
ENSMUSG00000026311ENSMUST00000164117Asb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ankyrin repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1929735]
ENSMUSG00000026349ENSMUST00000027587Ccnt211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin T2 [Source:MGI Symbol;Acc:MGI:1920199]
ENSMUSG00000026361ENSMUST00000018337Cdc7311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2384876]
ENSMUSG00000026390ENSMUST00000027639Marco11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
ENSMUSG00000026404ENSMUST00000027655Ddx5921ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Source:MGI Symbol;Acc:MGI:1915247]
ENSMUSG00000026470ENSMUST00000027743Stx611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
syntaxin 6 [Source:MGI Symbol;Acc:MGI:1926235]
ENSMUSG00000026482ENSMUST00000027760Rgl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
ENSMUSG00000026482ENSMUST00000111859Rgl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
ENSMUSG00000026495ENSMUST00000027775Efcab211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
EF-hand calcium binding domain 2 [Source:MGI Symbol;Acc:MGI:1915476]
ENSMUSG00000026519ENSMUST00000027800Tmem63a21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 63a [Source:MGI Symbol;Acc:MGI:2384789]
ENSMUSG00000026519ENSMUST00000161523Tmem63a21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 63a [Source:MGI Symbol;Acc:MGI:2384789]
ENSMUSG00000026519ENSMUST00000163894Tmem63a21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 63a [Source:MGI Symbol;Acc:MGI:2384789]
ENSMUSG00000026586ENSMUST00000027878Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026586ENSMUST00000075805Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026586ENSMUST00000164247Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026587ENSMUST00000046110Astn111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
astrotactin 1 [Source:MGI Symbol;Acc:MGI:1098567]
ENSMUSG00000026587ENSMUST00000170718Astn111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
astrotactin 1 [Source:MGI Symbol;Acc:MGI:1098567]
ENSMUSG00000026609ENSMUST00000027905Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026609ENSMUST00000060479Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026620ENSMUST00000027929Mark111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MAP/microtubule affinity-regulating kinase 1 [Source:MGI Symbol;Acc:MGI:2664902]
ENSMUSG00000026667ENSMUST00000027979Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026667ENSMUST00000150821Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026697ENSMUST00000028020Myoc21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
myocilin [Source:MGI Symbol;Acc:MGI:1202864]
ENSMUSG00000027520ENSMUST00000029025Zdbf211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, DBF-type containing 2 [Source:MGI Symbol;Acc:MGI:1921134]
ENSMUSG00000027520ENSMUST00000114132Zdbf211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, DBF-type containing 2 [Source:MGI Symbol;Acc:MGI:1921134]
ENSMUSG00000028033ENSMUST00000029667Kcnq511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily Q, member 5 [Source:MGI Symbol;Acc:MGI:1924937]
ENSMUSG00000028033ENSMUST00000115300Kcnq511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily Q, member 5 [Source:MGI Symbol;Acc:MGI:1924937]
ENSMUSG00000033257ENSMUST00000042125Ttll421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tubulin tyrosine ligase-like family, member 4 [Source:MGI Symbol;Acc:MGI:1914784]
ENSMUSG00000034220ENSMUST00000045970Gpc111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glypican 1 [Source:MGI Symbol;Acc:MGI:1194891]
ENSMUSG00000034353ENSMUST00000097648Ramp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
receptor (calcitonin) activity modifying protein 1 [Source:MGI Symbol;Acc:MGI:1858418]
ENSMUSG00000036155ENSMUST00000171405Mgat511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mannoside acetylglucosaminyltransferase 5 [Source:MGI Symbol;Acc:MGI:894701]
ENSMUSG00000037408ENSMUST00000153128Cnnm411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M4 [Source:MGI Symbol;Acc:MGI:2151060]
ENSMUSG00000037470ENSMUST00000046875Uggt111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
UDP-glucose glycoprotein glucosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2443162]
ENSMUSG00000037860ENSMUST00000147604Aim211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
absent in melanoma 2 [Source:MGI Symbol;Acc:MGI:2686159]
ENSMUSG00000037860ENSMUST00000166137Aim211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
absent in melanoma 2 [Source:MGI Symbol;Acc:MGI:2686159]
ENSMUSG00000038776ENSMUST00000036928Ephx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
epoxide hydrolase 1, microsomal [Source:MGI Symbol;Acc:MGI:95405]
ENSMUSG00000038793ENSMUST00000037361Lefty111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
left right determination factor 1 [Source:MGI Symbol;Acc:MGI:107405]
ENSMUSG00000038855ENSMUST00000070181Itpkb11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inositol 1,4,5-trisphosphate 3-kinase B [Source:MGI Symbol;Acc:MGI:109235]
ENSMUSG00000039997ENSMUST00000042228Ifi20311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
interferon activated gene 203 [Source:MGI Symbol;Acc:MGI:96428]
ENSMUSG00000039997ENSMUST00000129829Ifi20311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
interferon activated gene 203 [Source:MGI Symbol;Acc:MGI:96428]
ENSMUSG00000039997ENSMUST00000156895Ifi20311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
interferon activated gene 203 [Source:MGI Symbol;Acc:MGI:96428]
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We gratefully acknowledge support of this work by the William M. Keck Foundation