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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-125a-5p (MIMAT0000135)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001138ENSMUST00000001166Cnnm311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
ENSMUSG00000002459ENSMUST00000002533Rgs2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]
ENSMUSG00000002459ENSMUST00000118000Rgs2021ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]
ENSMUSG00000002459ENSMUST00000119256Rgs2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]
ENSMUSG00000002459ENSMUST00000165589Rgs2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]
ENSMUSG00000003135ENSMUST00000003219D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000003135ENSMUST00000161515D1Bwg0212e21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000004031ENSMUST00000004133Fam5b21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 5, member B [Source:MGI Symbol;Acc:MGI:2443333]
ENSMUSG00000004552ENSMUST00000073350Ctse11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cathepsin E [Source:MGI Symbol;Acc:MGI:107361]
ENSMUSG00000005674ENSMUST00000005817Tomm40l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocase of outer mitochondrial membrane 40 homolog-like (yeast) [Source:MGI Symbol;Acc:MGI:3589112]
ENSMUSG00000005674ENSMUST00000111327Tomm40l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocase of outer mitochondrial membrane 40 homolog-like (yeast) [Source:MGI Symbol;Acc:MGI:3589112]
ENSMUSG00000005886ENSMUST00000006037Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000068304Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000081713Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000006010ENSMUST00000094477BC00333111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cDNA sequence BC003331 [Source:MGI Symbol;Acc:MGI:2385108]
ENSMUSG00000006538ENSMUST00000006713Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000006538ENSMUST00000164097Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000006576ENSMUST00000006751Slc4a311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
ENSMUSG00000006576ENSMUST00000124341Slc4a311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 4 (anion exchanger), member 3 [Source:MGI Symbol;Acc:MGI:109350]
ENSMUSG00000009418ENSMUST00000040599Nav111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neuron navigator 1 [Source:MGI Symbol;Acc:MGI:2183683]
ENSMUSG00000010311ENSMUST00000010455Optc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
opticin [Source:MGI Symbol;Acc:MGI:2151113]
ENSMUSG00000010311ENSMUST00000124051Optc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
opticin [Source:MGI Symbol;Acc:MGI:2151113]
ENSMUSG00000010311ENSMUST00000153617Optc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
opticin [Source:MGI Symbol;Acc:MGI:2151113]
ENSMUSG00000013275ENSMUST00000086559Slc41a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 41, member 1 [Source:MGI Symbol;Acc:MGI:2444823]
ENSMUSG00000013698ENSMUST00000013842Pea15a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
ENSMUSG00000013997ENSMUST00000111289Nit111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nitrilase 1 [Source:MGI Symbol;Acc:MGI:1350916]
ENSMUSG00000014602ENSMUST00000086819Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000112958Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000168448Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171556Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171796Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000015222ENSMUST00000024639Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000077355Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114012Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114013Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114015Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114017Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114018Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000123647Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000171377Mtap221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000173855Mtap231ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015314ENSMUST00000015458Slamf621ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]
ENSMUSG00000015314ENSMUST00000042184Slamf631ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]
ENSMUSG00000015314ENSMUST00000171330Slamf641ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SLAM family member 6 [Source:MGI Symbol;Acc:MGI:1353620]
ENSMUSG00000015484ENSMUST00000015628Fam163a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 163, member A [Source:MGI Symbol;Acc:MGI:3618859]
ENSMUSG00000015829ENSMUST00000040797Tnr11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tenascin R [Source:MGI Symbol;Acc:MGI:99516]
ENSMUSG00000016181ENSMUST00000085555Diexf31ReverseView as cDNA map |
View as Table
Internal |
Ensembl
digestive organ expansion factor homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:2138080]
ENSMUSG00000016200ENSMUST00000016344Syt1411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
synaptotagmin XIV [Source:MGI Symbol;Acc:MGI:2444490]
ENSMUSG00000016200ENSMUST00000164191Syt1411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
synaptotagmin XIV [Source:MGI Symbol;Acc:MGI:2444490]
ENSMUSG00000016262ENSMUST00000155579Sertad411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SERTA domain containing 4 [Source:MGI Symbol;Acc:MGI:2443496]
ENSMUSG00000016494ENSMUST00000016638Cd3411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD34 antigen [Source:MGI Symbol;Acc:MGI:88329]
ENSMUSG00000016494ENSMUST00000110815Cd3411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD34 antigen [Source:MGI Symbol;Acc:MGI:88329]
ENSMUSG00000016526ENSMUST00000016670Dyrk311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 [Source:MGI Symbol;Acc:MGI:1330300]
ENSMUSG00000016529ENSMUST00000016673Il1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 10 [Source:MGI Symbol;Acc:MGI:96537]
ENSMUSG00000016918ENSMUST00000088585Sulf111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
sulfatase 1 [Source:MGI Symbol;Acc:MGI:2138563]
ENSMUSG00000018196ENSMUST00000050491Glrx211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glutaredoxin 2 (thioltransferase) [Source:MGI Symbol;Acc:MGI:1916617]
ENSMUSG00000018196ENSMUST00000145571Glrx211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glutaredoxin 2 (thioltransferase) [Source:MGI Symbol;Acc:MGI:1916617]
ENSMUSG00000019699ENSMUST00000111159Akt311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thymoma viral proto-oncogene 3 [Source:MGI Symbol;Acc:MGI:1345147]
ENSMUSG00000025776ENSMUST00000095075Crispld121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein LCCL domain containing 1 [Source:MGI Symbol;Acc:MGI:1934666]
ENSMUSG00000025905ENSMUST00000027038Oprk111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
opioid receptor, kappa 1 [Source:MGI Symbol;Acc:MGI:97439]
ENSMUSG00000025905ENSMUST00000160339Oprk111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
opioid receptor, kappa 1 [Source:MGI Symbol;Acc:MGI:97439]
ENSMUSG00000025905ENSMUST00000160777Oprk111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
opioid receptor, kappa 1 [Source:MGI Symbol;Acc:MGI:97439]
ENSMUSG00000025907ENSMUST00000027040Rb1cc111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RB1-inducible coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1341850]
ENSMUSG00000025911ENSMUST00000144177Adhfe111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
alcohol dehydrogenase, iron containing, 1 [Source:MGI Symbol;Acc:MGI:1923437]
ENSMUSG00000025915ENSMUST00000166384Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025915ENSMUST00000168907Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025915ENSMUST00000171265Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025930ENSMUST00000027062Msc21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
musculin [Source:MGI Symbol;Acc:MGI:1333884]
ENSMUSG00000025938ENSMUST00000171848Slco5a111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier organic anion transporter family, member 5A1 [Source:MGI Symbol;Acc:MGI:2443431]
ENSMUSG00000025956ENSMUST00000053469Mettl21a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
methyltransferase like 21A [Source:MGI Symbol;Acc:MGI:1914349]
ENSMUSG00000025956ENSMUST00000114079Mettl21a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
methyltransferase like 21A [Source:MGI Symbol;Acc:MGI:1914349]
ENSMUSG00000025959ENSMUST00000114086Klf711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Kruppel-like factor 7 (ubiquitous) [Source:MGI Symbol;Acc:MGI:1935151]
ENSMUSG00000025963ENSMUST00000114094Mdh1b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
malate dehydrogenase 1B, NAD (soluble) [Source:MGI Symbol;Acc:MGI:1923918]
ENSMUSG00000025964ENSMUST00000087374Adam2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000097717Adam2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000114103Adam2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000114107Adam2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000141545Adam2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025971ENSMUST000000271149430016H08Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 9430016H08 gene [Source:MGI Symbol;Acc:MGI:1915365]
ENSMUSG00000025997ENSMUST00000027146Ikzf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026017ENSMUST00000027171Carf11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
ENSMUSG00000026017ENSMUST00000168377Carf11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
ENSMUSG00000026019ENSMUST00000117438Wdr1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat domain 12 [Source:MGI Symbol;Acc:MGI:1927241]
ENSMUSG00000026020ENSMUST00000027174Nop5811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
NOP58 ribonucleoprotein homolog (yeast) [Source:MGI Symbol;Acc:MGI:1933184]
ENSMUSG00000026031ENSMUST00000114313Cflar11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CASP8 and FADD-like apoptosis regulator [Source:MGI Symbol;Acc:MGI:1336166]
ENSMUSG00000026034ENSMUST00000109114Clk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
CDC-like kinase 1 [Source:MGI Symbol;Acc:MGI:107403]
ENSMUSG00000026042ENSMUST00000086430Col5a241ReverseView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
ENSMUSG00000026048ENSMUST00000027214Ercc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:MGI Symbol;Acc:MGI:103582]
ENSMUSG00000026048ENSMUST00000166196Ercc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:MGI Symbol;Acc:MGI:103582]
ENSMUSG00000026058ENSMUST00000027226Khdrbs211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
KH domain containing, RNA binding, signal transduction associated 2 [Source:MGI Symbol;Acc:MGI:2159649]
ENSMUSG00000026062ENSMUST00000027231Slc9a211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 9 (sodium/hydrogen exchanger), member 2 [Source:MGI Symbol;Acc:MGI:105075]
ENSMUSG00000026072ENSMUST00000027241Il1r111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 1 receptor, type I [Source:MGI Symbol;Acc:MGI:96545]
ENSMUSG00000026074ENSMUST00000027244Map4k421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000088000Map4k421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000163854Map4k421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000168431Map4k421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000168512Map4k421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026087ENSMUST00000027256Mrpl3011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitochondrial ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:1333820]
ENSMUSG00000026096ENSMUST00000114484Osgepl111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
O-sialoglycoprotein endopeptidase-like 1 [Source:MGI Symbol;Acc:MGI:1919335]
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We gratefully acknowledge support of this work by the William M. Keck Foundation