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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-140-3p (MIMAT0000152)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000003135ENSMUST00000003219D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000003135ENSMUST00000161515D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000003458ENSMUST00000003550Ncstn11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nicastrin [Source:MGI Symbol;Acc:MGI:1891700]
ENSMUSG00000003721ENSMUST00000003818Insig211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000071064Insig211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000159085Insig211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000160968Insig211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000004364ENSMUST00000163119Cul311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cullin 3 [Source:MGI Symbol;Acc:MGI:1347360]
ENSMUSG00000004768ENSMUST00000088287Rab2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RAB23, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:99833]
ENSMUSG00000005501ENSMUST00000113153Usp4011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ubiquitin specific peptidase 40 [Source:MGI Symbol;Acc:MGI:2443184]
ENSMUSG00000005886ENSMUST00000006037Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000068304Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000081713Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000006301ENSMUST00000113796Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006411ENSMUST00000006578Pvrl421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
poliovirus receptor-related 4 [Source:MGI Symbol;Acc:MGI:1918990]
ENSMUSG00000006411ENSMUST00000111286Pvrl421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
poliovirus receptor-related 4 [Source:MGI Symbol;Acc:MGI:1918990]
ENSMUSG00000006538ENSMUST00000006713Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000006538ENSMUST00000164097Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000013275ENSMUST00000086559Slc41a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 41, member 1 [Source:MGI Symbol;Acc:MGI:2444823]
ENSMUSG00000014602ENSMUST00000086819Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000112958Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000168448Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171556Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171796Kif1a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000016179ENSMUST00000016323Camk1g11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calcium/calmodulin-dependent protein kinase I gamma [Source:MGI Symbol;Acc:MGI:2388073]
ENSMUSG00000016181ENSMUST00000085555Diexf11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
digestive organ expansion factor homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:2138080]
ENSMUSG00000016200ENSMUST00000164191Syt1411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
synaptotagmin XIV [Source:MGI Symbol;Acc:MGI:2444490]
ENSMUSG00000018199ENSMUST00000159879Trove211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
TROVE domain family, member 2 [Source:MGI Symbol;Acc:MGI:106652]
ENSMUSG00000025911ENSMUST00000144177Adhfe111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
alcohol dehydrogenase, iron containing, 1 [Source:MGI Symbol;Acc:MGI:1923437]
ENSMUSG00000025920ENSMUST00000054668Stau211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
staufen (RNA binding protein) homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1352508]
ENSMUSG00000025920ENSMUST00000162751Stau211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
staufen (RNA binding protein) homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1352508]
ENSMUSG00000025935ENSMUST00000027068Tram111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocating chain-associating membrane protein 1 [Source:MGI Symbol;Acc:MGI:1919515]
ENSMUSG00000025949ENSMUST00000097707Pikfyve11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphoinositide kinase, FYVE finger containing [Source:MGI Symbol;Acc:MGI:1335106]
ENSMUSG00000025950ENSMUST00000027087Idh111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
ENSMUSG00000025950ENSMUST00000097709Idh111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
ENSMUSG00000025950ENSMUST00000169032Idh111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
ENSMUSG00000025997ENSMUST00000027146Ikzf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026017ENSMUST00000027171Carf11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
ENSMUSG00000026017ENSMUST00000168377Carf11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
ENSMUSG00000026018ENSMUST00000027172Ica1l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
islet cell autoantigen 1-like [Source:MGI Symbol;Acc:MGI:1917625]
ENSMUSG00000026042ENSMUST00000086430Col5a211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
ENSMUSG00000026074ENSMUST00000027244Map4k411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000088000Map4k411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000163854Map4k411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000168431Map4k411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026074ENSMUST00000168512Map4k411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitogen-activated protein kinase kinase kinase kinase 4 [Source:MGI Symbol;Acc:MGI:1349394]
ENSMUSG00000026088ENSMUST00000027257Mitd111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MIT, microtubule interacting and transport, domain containing 1 [Source:MGI Symbol;Acc:MGI:1916278]
ENSMUSG00000026088ENSMUST00000139725Mitd111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MIT, microtubule interacting and transport, domain containing 1 [Source:MGI Symbol;Acc:MGI:1916278]
ENSMUSG00000026098ENSMUST00000027267Pms111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
postmeiotic segregation increased 1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1202302]
ENSMUSG00000026112ENSMUST000000272866330578E17Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 6330578E17 gene [Source:MGI Symbol;Acc:MGI:1923428]
ENSMUSG00000026114ENSMUST00000027288Cnga311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclic nucleotide gated channel alpha 3 [Source:MGI Symbol;Acc:MGI:1341818]
ENSMUSG00000026127ENSMUST00000027303Imp411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast) [Source:MGI Symbol;Acc:MGI:106572]
ENSMUSG00000026131ENSMUST00000097785Dst11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026131ENSMUST00000097786Dst11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026147ENSMUST00000054588Col9a121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026147ENSMUST00000084261Col9a121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026147ENSMUST00000088349Col9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026147ENSMUST00000115252Col9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type IX, alpha 1 [Source:MGI Symbol;Acc:MGI:88465]
ENSMUSG00000026170ENSMUST00000027356Cyp27a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cytochrome P450, family 27, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88594]
ENSMUSG00000026174ENSMUST00000087215Rqcd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
rcd1 (required for cell differentiation) homolog 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1928902]
ENSMUSG00000026179ENSMUST00000027370Pnkd21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paroxysmal nonkinesiogenic dyskinesia [Source:MGI Symbol;Acc:MGI:1930773]
ENSMUSG00000026182ENSMUST00000027374Tnp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transition protein 1 [Source:MGI Symbol;Acc:MGI:98784]
ENSMUSG00000026213ENSMUST00000027414Stk11ip11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 11 interacting protein [Source:MGI Symbol;Acc:MGI:1918978]
ENSMUSG00000026213ENSMUST00000113553Stk11ip11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 11 interacting protein [Source:MGI Symbol;Acc:MGI:1918978]
ENSMUSG00000026219ENSMUST00000027421Trip1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thyroid hormone receptor interactor 12 [Source:MGI Symbol;Acc:MGI:1309481]
ENSMUSG00000026227ENSMUST000001658242810459M11Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2810459M11 gene [Source:MGI Symbol;Acc:MGI:1920042]
ENSMUSG00000026229ENSMUST00000027432Psmd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 [Source:MGI Symbol;Acc:MGI:1917497]
ENSMUSG00000026238ENSMUST00000045897Ptma11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
ENSMUSG00000026258ENSMUST000000274763110079O15Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 3110079O15 gene [Source:MGI Symbol;Acc:MGI:1920484]
ENSMUSG00000026270ENSMUST00000027488Capn1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calpain 10 [Source:MGI Symbol;Acc:MGI:1344392]
ENSMUSG00000026270ENSMUST00000117814Capn1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calpain 10 [Source:MGI Symbol;Acc:MGI:1344392]
ENSMUSG00000026273ENSMUST00000027492Mterfd211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MTERF domain containing 2 [Source:MGI Symbol;Acc:MGI:1918355]
ENSMUSG00000026283ENSMUST00000027505Ing511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
inhibitor of growth family, member 5 [Source:MGI Symbol;Acc:MGI:1922816]
ENSMUSG00000026308ENSMUST00000027533Klhl3021ForwardView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 30 (Drosophila) [Source:MGI Symbol;Acc:MGI:1918038]
ENSMUSG00000026312ENSMUST00000086681Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026315ENSMUST00000000514Serpinb821ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine (or cysteine) peptidase inhibitor, clade B, member 8 [Source:MGI Symbol;Acc:MGI:894657]
ENSMUSG00000026315ENSMUST00000112706Serpinb821ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine (or cysteine) peptidase inhibitor, clade B, member 8 [Source:MGI Symbol;Acc:MGI:894657]
ENSMUSG00000026321ENSMUST00000027559Tnfrsf11a101ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tumor necrosis factor receptor superfamily, member 11a [Source:MGI Symbol;Acc:MGI:1314891]
ENSMUSG00000026327ENSMUST00000027566Serpinb1111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11 [Source:MGI Symbol;Acc:MGI:1914207]
ENSMUSG00000026380ENSMUST00000027629Tcfcp2l131ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transcription factor CP2-like 1 [Source:MGI Symbol;Acc:MGI:2444691]
ENSMUSG00000026383ENSMUST00000052404Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026383ENSMUST00000163147Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026395ENSMUST00000027645Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000081416Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112036Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112038Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026405ENSMUST00000027657C4bp11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component 4 binding protein [Source:MGI Symbol;Acc:MGI:88229]
ENSMUSG00000026405ENSMUST00000137276C4bp11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component 4 binding protein [Source:MGI Symbol;Acc:MGI:88229]
ENSMUSG00000026409ENSMUST00000050406Pfkfb221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Source:MGI Symbol;Acc:MGI:107815]
ENSMUSG00000026409ENSMUST00000066863Pfkfb221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Source:MGI Symbol;Acc:MGI:107815]
ENSMUSG00000026409ENSMUST00000169659Pfkfb221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 [Source:MGI Symbol;Acc:MGI:107815]
ENSMUSG00000026413ENSMUST00000027667Pkp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
ENSMUSG00000026413ENSMUST00000163260Pkp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
plakophilin 1 [Source:MGI Symbol;Acc:MGI:1328359]
ENSMUSG00000026425ENSMUST00000097588Srgap211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SLIT-ROBO Rho GTPase activating protein 2 [Source:MGI Symbol;Acc:MGI:109605]
ENSMUSG00000026435ENSMUST00000027695Slc45a311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 45, member 3 [Source:MGI Symbol;Acc:MGI:1922082]
ENSMUSG00000026442ENSMUST00000043189Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026442ENSMUST00000094569Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026452ENSMUST00000121990Syt211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
synaptotagmin II [Source:MGI Symbol;Acc:MGI:99666]
ENSMUSG00000026463ENSMUST00000048953Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
ENSMUSG00000026463ENSMUST00000112264Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
Please email us for questions and/or suggestions
GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation