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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-144-3p (MIMAT0000156)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000003135ENSMUST00000003219D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000003135ENSMUST00000161515D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000006301ENSMUST00000113796Tmbim121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006304ENSMUST00000006467Arpc211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
ENSMUSG00000006304ENSMUST00000113819Arpc211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
ENSMUSG00000006304ENSMUST00000113820Arpc211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
ENSMUSG00000013593ENSMUST00000013737Ndufs211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Source:MGI Symbol;Acc:MGI:2385112]
ENSMUSG00000014602ENSMUST00000168448Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171556Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171796Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000015962ENSMUST000000161061700016C15Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700016C15 gene [Source:MGI Symbol;Acc:MGI:1916678]
ENSMUSG00000025776ENSMUST00000095075Crispld111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein LCCL domain containing 1 [Source:MGI Symbol;Acc:MGI:1934666]
ENSMUSG00000025776ENSMUST00000159958Crispld111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cysteine-rich secretory protein LCCL domain containing 1 [Source:MGI Symbol;Acc:MGI:1934666]
ENSMUSG00000025912ENSMUST00000088658Mybl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myeloblastosis oncogene-like 1 [Source:MGI Symbol;Acc:MGI:99925]
ENSMUSG00000025912ENSMUST00000163098Mybl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myeloblastosis oncogene-like 1 [Source:MGI Symbol;Acc:MGI:99925]
ENSMUSG00000025978ENSMUST00000027121Rftn211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
raftlin family member 2 [Source:MGI Symbol;Acc:MGI:1921263]
ENSMUSG00000025997ENSMUST00000027146Ikzf221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026111ENSMUST00000027285Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026111ENSMUST00000114925Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026111ENSMUST00000118059Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026112ENSMUST000000272866330578E17Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 6330578E17 gene [Source:MGI Symbol;Acc:MGI:1923428]
ENSMUSG00000026123ENSMUST00000027297Plekhb211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
pleckstrin homology domain containing, family B (evectins) member 2 [Source:MGI Symbol;Acc:MGI:2385825]
ENSMUSG00000026150ENSMUST00000078332Mff11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mitochondrial fission factor [Source:MGI Symbol;Acc:MGI:1922984]
ENSMUSG00000026185ENSMUST00000027377Igfbp511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
ENSMUSG00000026197ENSMUST00000027394Zfand2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, AN1 type domain 2B [Source:MGI Symbol;Acc:MGI:1916068]
ENSMUSG00000026197ENSMUST00000160439Zfand2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, AN1 type domain 2B [Source:MGI Symbol;Acc:MGI:1916068]
ENSMUSG00000026201ENSMUST00000027401Stk1611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 16 [Source:MGI Symbol;Acc:MGI:1313271]
ENSMUSG00000026208ENSMUST00000027409Des11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
desmin [Source:MGI Symbol;Acc:MGI:94885]
ENSMUSG00000026219ENSMUST00000027421Trip1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thyroid hormone receptor interactor 12 [Source:MGI Symbol;Acc:MGI:1309481]
ENSMUSG00000026229ENSMUST00000027432Psmd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 [Source:MGI Symbol;Acc:MGI:1917497]
ENSMUSG00000026245ENSMUST00000068333Farsb11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phenylalanyl-tRNA synthetase, beta subunit [Source:MGI Symbol;Acc:MGI:1346035]
ENSMUSG00000026245ENSMUST00000170217Farsb11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phenylalanyl-tRNA synthetase, beta subunit [Source:MGI Symbol;Acc:MGI:1346035]
ENSMUSG00000026289ENSMUST00000027512Atg16l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 16-like 1 (yeast) [Source:MGI Symbol;Acc:MGI:1924290]
ENSMUSG00000026289ENSMUST00000113186Atg16l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 16-like 1 (yeast) [Source:MGI Symbol;Acc:MGI:1924290]
ENSMUSG00000026308ENSMUST00000027533Klhl3011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 30 (Drosophila) [Source:MGI Symbol;Acc:MGI:1918038]
ENSMUSG00000026312ENSMUST00000027542Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000112701Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000172005Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026342ENSMUST00000027580Slc35f511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 35, member F5 [Source:MGI Symbol;Acc:MGI:1921400]
ENSMUSG00000026358ENSMUST00000172388Rgs121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 1 [Source:MGI Symbol;Acc:MGI:1354694]
ENSMUSG00000026395ENSMUST00000027645Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000081416Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112036Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112038Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026399ENSMUST00000027650Cd5511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
CD55 antigen [Source:MGI Symbol;Acc:MGI:104850]
ENSMUSG00000026427ENSMUST00000068791Eif2d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 2D [Source:MGI Symbol;Acc:MGI:109342]
ENSMUSG00000026427ENSMUST00000068805Eif2d11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 2D [Source:MGI Symbol;Acc:MGI:109342]
ENSMUSG00000026464ENSMUST00000027736Zc3h11a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger CCCH type containing 11A [Source:MGI Symbol;Acc:MGI:1917829]
ENSMUSG00000026489ENSMUST00000027766Adck311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aarF domain containing kinase 3 [Source:MGI Symbol;Acc:MGI:1914676]
ENSMUSG00000026489ENSMUST00000170472Adck311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aarF domain containing kinase 3 [Source:MGI Symbol;Acc:MGI:1914676]
ENSMUSG00000026553ENSMUST00000074152Copa11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
coatomer protein complex subunit alpha [Source:MGI Symbol;Acc:MGI:1334462]
ENSMUSG00000026605ENSMUST00000027900Cenpf11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
centromere protein F [Source:MGI Symbol;Acc:MGI:1313302]
ENSMUSG00000026605ENSMUST00000171929Cenpf11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
centromere protein F [Source:MGI Symbol;Acc:MGI:1313302]
ENSMUSG00000026615ENSMUST00000046514Eprs11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glutamyl-prolyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:97838]
ENSMUSG00000026623ENSMUST00000110855Lpgat111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
lysophosphatidylglycerol acyltransferase 1 [Source:MGI Symbol;Acc:MGI:2446186]
ENSMUSG00000026623ENSMUST00000110856Lpgat111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
lysophosphatidylglycerol acyltransferase 1 [Source:MGI Symbol;Acc:MGI:2446186]
ENSMUSG00000026640ENSMUST00000027952Plxna231ForwardView as cDNA map |
View as Table
Internal |
Ensembl
plexin A2 [Source:MGI Symbol;Acc:MGI:107684]
ENSMUSG00000026694ENSMUST00000028017Mettl1311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
methyltransferase like 13 [Source:MGI Symbol;Acc:MGI:1918699]
ENSMUSG00000026708ENSMUST00000028035Cenpl11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
centromere protein L [Source:MGI Symbol;Acc:MGI:1917704]
ENSMUSG00000026708ENSMUST00000111618Cenpl11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
centromere protein L [Source:MGI Symbol;Acc:MGI:1917704]
ENSMUSG00000026708ENSMUST00000111620Cenpl11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
centromere protein L [Source:MGI Symbol;Acc:MGI:1917704]
ENSMUSG00000032908ENSMUST00000036172Sgpp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
sphingosine-1-phosphate phosphotase 2 [Source:MGI Symbol;Acc:MGI:3589109]
ENSMUSG00000033021ENSMUST00000037796Gmppa11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
GDP-mannose pyrophosphorylase A [Source:MGI Symbol;Acc:MGI:1916330]
ENSMUSG00000033021ENSMUST00000113584Gmppa11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
GDP-mannose pyrophosphorylase A [Source:MGI Symbol;Acc:MGI:1916330]
ENSMUSG00000033671ENSMUST00000138762Cep35021ReverseView as cDNA map |
View as Table
Internal |
Ensembl
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
ENSMUSG00000033964ENSMUST00000039867Zbtb4111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger and BTB domain containing 41 homolog [Source:MGI Symbol;Acc:MGI:2444487]
ENSMUSG00000034292ENSMUST00000047242Traf3ip111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
TRAF3 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1921269]
ENSMUSG00000037503ENSMUST00000047534Fam168b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 168, member B [Source:MGI Symbol;Acc:MGI:2448487]
ENSMUSG00000037924ENSMUST00000038432Olfr1611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 16 [Source:MGI Symbol;Acc:MGI:106648]
ENSMUSG00000037995ENSMUST00000052629Igsf911ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin superfamily, member 9 [Source:MGI Symbol;Acc:MGI:2135283]
ENSMUSG00000037995ENSMUST00000111235Igsf911ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin superfamily, member 9 [Source:MGI Symbol;Acc:MGI:2135283]
ENSMUSG00000038463ENSMUST00000046792Olfml2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactomedin-like 2B [Source:MGI Symbol;Acc:MGI:2443310]
ENSMUSG00000038633ENSMUST00000035295Degs111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
degenerative spermatocyte homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1097711]
ENSMUSG00000038768ENSMUST000000368199130409I23Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 9130409I23 gene [Source:MGI Symbol;Acc:MGI:3588271]
ENSMUSG00000038768ENSMUST000001639089130409I23Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 9130409I23 gene [Source:MGI Symbol;Acc:MGI:3588271]
ENSMUSG00000039349ENSMUST00000048308C130074G19Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA C130074G19 gene [Source:MGI Symbol;Acc:MGI:2444831]
ENSMUSG00000039354ENSMUST00000047615Smarcal111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:MGI Symbol;Acc:MGI:1859183]
ENSMUSG00000039377ENSMUST00000048572Hlx11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
H2.0-like homeobox [Source:MGI Symbol;Acc:MGI:96109]
ENSMUSG00000039395ENSMUST00000048860Mreg11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
melanoregulin [Source:MGI Symbol;Acc:MGI:2151839]
ENSMUSG00000039748ENSMUST00000039725Exo111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
exonuclease 1 [Source:MGI Symbol;Acc:MGI:1349427]
ENSMUSG00000040423ENSMUST00000161609Rc3h121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
ENSMUSG00000040848ENSMUST00000043338Sft2d211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SFT2 domain containing 2 [Source:MGI Symbol;Acc:MGI:1917362]
ENSMUSG00000040865ENSMUST00000097718Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000040865ENSMUST00000165066Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000040865ENSMUST00000172416Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000041763ENSMUST00000087933Tpp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tripeptidyl peptidase II [Source:MGI Symbol;Acc:MGI:102724]
ENSMUSG00000041859ENSMUST00000053266Mcm311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
minichromosome maintenance deficient 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:101845]
ENSMUSG00000041945ENSMUST00000039672Mfsd911ReverseView as cDNA map |
View as Table
Internal |
Ensembl
major facilitator superfamily domain containing 9 [Source:MGI Symbol;Acc:MGI:2443548]
ENSMUSG00000042581ENSMUST00000040311Thsd7b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
thrombospondin, type I, domain containing 7B [Source:MGI Symbol;Acc:MGI:2443925]
ENSMUSG00000042581ENSMUST00000073527Thsd7b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
thrombospondin, type I, domain containing 7B [Source:MGI Symbol;Acc:MGI:2443925]
ENSMUSG00000042793ENSMUST00000044828Lgr611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
leucine-rich repeat-containing G protein-coupled receptor 6 [Source:MGI Symbol;Acc:MGI:2441805]
ENSMUSG00000044337ENSMUST00000065587Cxcr711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
chemokine (C-X-C motif) receptor 7 [Source:MGI Symbol;Acc:MGI:109562]
ENSMUSG00000044340ENSMUST00000061047Phlpp121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
PH domain and leucine rich repeat protein phosphatase 1 [Source:MGI Symbol;Acc:MGI:2138327]
ENSMUSG00000044457ENSMUST00000051224Gm477611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 4776 [Source:MGI Symbol;Acc:MGI:3643324]
ENSMUSG00000044457ENSMUST00000167676Gm477611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 4776 [Source:MGI Symbol;Acc:MGI:3643324]
ENSMUSG00000044457ENSMUST00000171707Gm477611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 4776 [Source:MGI Symbol;Acc:MGI:3643324]
ENSMUSG00000045216ENSMUST00000088174Hs6st111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
heparan sulfate 6-O-sulfotransferase 1 [Source:MGI Symbol;Acc:MGI:1354958]
ENSMUSG00000045382ENSMUST00000052172Cxcr411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
chemokine (C-X-C motif) receptor 4 [Source:MGI Symbol;Acc:MGI:109563]
ENSMUSG00000045382ENSMUST00000142893Cxcr411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
chemokine (C-X-C motif) receptor 4 [Source:MGI Symbol;Acc:MGI:109563]
ENSMUSG00000045648ENSMUST00000053922Vwc2l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
von Willebrand factor C domain-containing protein 2-like [Source:MGI Symbol;Acc:MGI:2444069]
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We gratefully acknowledge support of this work by the William M. Keck Foundation