Back to main page

Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-200a-3p (MIMAT0000519)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


Please hold, your search is in progress...
TIP! If you show ALL results, you'll be able to dynamically sort by one or multiple columns (hold shift)
TIP! You can save this HTML file locally by going to File->Save As if you want to access it quickly later on


Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001138ENSMUST00000001166Cnnm311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
ENSMUSG00000001143ENSMUST00000115011Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000001143ENSMUST00000125304Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000005763ENSMUST00000005907Cd24711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD247 antigen [Source:MGI Symbol;Acc:MGI:88334]
ENSMUSG00000008475ENSMUST00000077755Arpc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
actin related protein 2/3 complex, subunit 5 [Source:MGI Symbol;Acc:MGI:1915021]
ENSMUSG00000008475ENSMUST00000097536Arpc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
actin related protein 2/3 complex, subunit 5 [Source:MGI Symbol;Acc:MGI:1915021]
ENSMUSG00000013698ENSMUST00000013842Pea15a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
ENSMUSG00000015222ENSMUST00000077355Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114012Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114015Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114017Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114018Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015484ENSMUST00000015628Fam163a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 163, member A [Source:MGI Symbol;Acc:MGI:3618859]
ENSMUSG00000025777ENSMUST00000026879Gdap111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ganglioside-induced differentiation-associated-protein 1 [Source:MGI Symbol;Acc:MGI:1338002]
ENSMUSG00000025902ENSMUST00000027035Sox1711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SRY-box containing gene 17 [Source:MGI Symbol;Acc:MGI:107543]
ENSMUSG00000025907ENSMUST00000027040Rb1cc111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RB1-inducible coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1341850]
ENSMUSG00000025912ENSMUST00000088658Mybl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myeloblastosis oncogene-like 1 [Source:MGI Symbol;Acc:MGI:99925]
ENSMUSG00000025931ENSMUST00000068880Paqr811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
progestin and adipoQ receptor family member VIII [Source:MGI Symbol;Acc:MGI:1921479]
ENSMUSG00000025937ENSMUST00000027071Lactb221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lactamase, beta 2 [Source:MGI Symbol;Acc:MGI:2442551]
ENSMUSG00000025940ENSMUST00000065373Tmem7011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 70 [Source:MGI Symbol;Acc:MGI:1915068]
ENSMUSG00000025949ENSMUST00000097707Pikfyve11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphoinositide kinase, FYVE finger containing [Source:MGI Symbol;Acc:MGI:1335106]
ENSMUSG00000025952ENSMUST00000114064Crygc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
crystallin, gamma C [Source:MGI Symbol;Acc:MGI:88523]
ENSMUSG00000025993ENSMUST00000027137Slc40a111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 40 (iron-regulated transporter), member 1 [Source:MGI Symbol;Acc:MGI:1315204]
ENSMUSG00000025997ENSMUST00000027146Ikzf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026072ENSMUST00000027241Il1r111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 1 receptor, type I [Source:MGI Symbol;Acc:MGI:96545]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026097ENSMUST00000027266Ormdl111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ORM1-like 1 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2181669]
ENSMUSG00000026110ENSMUST00000042161Mgat4a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mannoside acetylglucosaminyltransferase 4, isoenzyme A [Source:MGI Symbol;Acc:MGI:2662992]
ENSMUSG00000026110ENSMUST00000151952Mgat4a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mannoside acetylglucosaminyltransferase 4, isoenzyme A [Source:MGI Symbol;Acc:MGI:2662992]
ENSMUSG00000026156ENSMUST00000063663B3gat211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:MGI Symbol;Acc:MGI:2389490]
ENSMUSG00000026172ENSMUST00000027358Bcs1l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
BCS1-like (yeast) [Source:MGI Symbol;Acc:MGI:1914071]
ENSMUSG00000026172ENSMUST00000113732Bcs1l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
BCS1-like (yeast) [Source:MGI Symbol;Acc:MGI:1914071]
ENSMUSG00000026172ENSMUST00000113733Bcs1l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
BCS1-like (yeast) [Source:MGI Symbol;Acc:MGI:1914071]
ENSMUSG00000026246ENSMUST00000027455Alppl211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
alkaline phosphatase, placental-like 2 [Source:MGI Symbol;Acc:MGI:108009]
ENSMUSG00000026270ENSMUST00000027488Capn1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calpain 10 [Source:MGI Symbol;Acc:MGI:1344392]
ENSMUSG00000026275ENSMUST00000027494Ppp1r711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein phosphatase 1, regulatory (inhibitor) subunit 7 [Source:MGI Symbol;Acc:MGI:1913635]
ENSMUSG00000026289ENSMUST00000027512Atg16l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 16-like 1 (yeast) [Source:MGI Symbol;Acc:MGI:1924290]
ENSMUSG00000026289ENSMUST00000113186Atg16l111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 16-like 1 (yeast) [Source:MGI Symbol;Acc:MGI:1924290]
ENSMUSG00000026312ENSMUST00000027542Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000112701Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026312ENSMUST00000172005Cdh711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cadherin 7, type 2 [Source:MGI Symbol;Acc:MGI:2442792]
ENSMUSG00000026335ENSMUST00000058762Pam11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylglycine alpha-amidating monooxygenase [Source:MGI Symbol;Acc:MGI:97475]
ENSMUSG00000026335ENSMUST00000097625Pam11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylglycine alpha-amidating monooxygenase [Source:MGI Symbol;Acc:MGI:97475]
ENSMUSG00000026335ENSMUST00000161567Pam11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylglycine alpha-amidating monooxygenase [Source:MGI Symbol;Acc:MGI:97475]
ENSMUSG00000026335ENSMUST00000164496Pam11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylglycine alpha-amidating monooxygenase [Source:MGI Symbol;Acc:MGI:97475]
ENSMUSG00000026335ENSMUST00000167040Pam11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peptidylglycine alpha-amidating monooxygenase [Source:MGI Symbol;Acc:MGI:97475]
ENSMUSG00000026356ENSMUST00000027602Dars11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aspartyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:2442544]
ENSMUSG00000026356ENSMUST00000064309Dars11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aspartyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:2442544]
ENSMUSG00000026365ENSMUST00000066859Cfh21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
ENSMUSG00000026365ENSMUST00000111976Cfh21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
ENSMUSG00000026365ENSMUST00000111977Cfh21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component factor h [Source:MGI Symbol;Acc:MGI:88385]
ENSMUSG00000026395ENSMUST00000027645Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000081416Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112036Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112038Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026425ENSMUST00000097588Srgap221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SLIT-ROBO Rho GTPase activating protein 2 [Source:MGI Symbol;Acc:MGI:109605]
ENSMUSG00000026442ENSMUST00000043189Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026442ENSMUST00000094569Nfasc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neurofascin [Source:MGI Symbol;Acc:MGI:104753]
ENSMUSG00000026447ENSMUST00000077730Pik3c2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
ENSMUSG00000026478ENSMUST00000027752Lamc111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
laminin, gamma 1 [Source:MGI Symbol;Acc:MGI:99914]
ENSMUSG00000026496ENSMUST00000027777Parp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
poly (ADP-ribose) polymerase family, member 1 [Source:MGI Symbol;Acc:MGI:1340806]
ENSMUSG00000026586ENSMUST00000027878Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026586ENSMUST00000075805Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026586ENSMUST00000174397Prrx111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired related homeobox 1 [Source:MGI Symbol;Acc:MGI:97712]
ENSMUSG00000026609ENSMUST00000027905Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026609ENSMUST00000060479Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026617ENSMUST00000027916Bpnt111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
bisphosphate 3'-nucleotidase 1 [Source:MGI Symbol;Acc:MGI:1338800]
ENSMUSG00000026618ENSMUST00000027921Iars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
ENSMUSG00000026659ENSMUST00000027970Dusp1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
dual specificity phosphatase 12 [Source:MGI Symbol;Acc:MGI:1890614]
ENSMUSG00000026659ENSMUST00000046476Dusp1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
dual specificity phosphatase 12 [Source:MGI Symbol;Acc:MGI:1890614]
ENSMUSG00000026678ENSMUST00000027997Rgs511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 5 [Source:MGI Symbol;Acc:MGI:1098434]
ENSMUSG00000026687ENSMUST00000028004Aldh9a111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
aldehyde dehydrogenase 9, subfamily A1 [Source:MGI Symbol;Acc:MGI:1861622]
ENSMUSG00000026709ENSMUST00000035430Dars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aspartyl-tRNA synthetase 2 (mitochondrial) [Source:MGI Symbol;Acc:MGI:2442510]
ENSMUSG00000026782ENSMUST00000052332Abi211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
abl-interactor 2 [Source:MGI Symbol;Acc:MGI:106913]
ENSMUSG00000026782ENSMUST00000087417Abi211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
abl-interactor 2 [Source:MGI Symbol;Acc:MGI:106913]
ENSMUSG00000032666ENSMUST000000445811700025G04Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700025G04 gene [Source:MGI Symbol;Acc:MGI:1916649]
ENSMUSG00000032666ENSMUST000001215331700025G04Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700025G04 gene [Source:MGI Symbol;Acc:MGI:1916649]
ENSMUSG00000033124ENSMUST00000040689Atg9a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
autophagy-related 9A (yeast) [Source:MGI Symbol;Acc:MGI:2138446]
ENSMUSG00000033257ENSMUST00000042125Ttll411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tubulin tyrosine ligase-like family, member 4 [Source:MGI Symbol;Acc:MGI:1914784]
ENSMUSG00000033557ENSMUST00000086153Fam20b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 20, member B [Source:MGI Symbol;Acc:MGI:2443990]
ENSMUSG00000033557ENSMUST00000122424Fam20b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 20, member B [Source:MGI Symbol;Acc:MGI:2443990]
ENSMUSG00000033849ENSMUST00000038252B3galt211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 [Source:MGI Symbol;Acc:MGI:1349461]
ENSMUSG00000034066ENSMUST00000041983Farp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
FERM, RhoGEF and pleckstrin domain protein 2 [Source:MGI Symbol;Acc:MGI:2385126]
ENSMUSG00000034066ENSMUST00000120301Farp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
FERM, RhoGEF and pleckstrin domain protein 2 [Source:MGI Symbol;Acc:MGI:2385126]
ENSMUSG00000036251ENSMUST00000040210Trpm811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily M, member 8 [Source:MGI Symbol;Acc:MGI:2181435]
ENSMUSG00000036251ENSMUST00000113114Trpm811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily M, member 8 [Source:MGI Symbol;Acc:MGI:2181435]
ENSMUSG00000036251ENSMUST00000171176Trpm811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily M, member 8 [Source:MGI Symbol;Acc:MGI:2181435]
ENSMUSG00000037375ENSMUST00000044190Hhat11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hedgehog acyltransferase [Source:MGI Symbol;Acc:MGI:2444681]
ENSMUSG00000037470ENSMUST00000046875Uggt111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
UDP-glucose glycoprotein glucosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2443162]
ENSMUSG00000037503ENSMUST00000047534Fam168b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 168, member B [Source:MGI Symbol;Acc:MGI:2448487]
ENSMUSG00000037509ENSMUST00000159747Arhgef411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Rho guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:2442507]
ENSMUSG00000038323ENSMUST000000427341700066M21Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700066M21 gene [Source:MGI Symbol;Acc:MGI:1920717]
ENSMUSG00000038463ENSMUST00000046792Olfml2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactomedin-like 2B [Source:MGI Symbol;Acc:MGI:2443310]
ENSMUSG00000039349ENSMUST00000048308C130074G19Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA C130074G19 gene [Source:MGI Symbol;Acc:MGI:2444831]
ENSMUSG00000040612ENSMUST00000038620Ildr211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
ENSMUSG00000040612ENSMUST00000111416Ildr221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
ENSMUSG00000040612ENSMUST00000168893Ildr211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
ENSMUSG00000040710ENSMUST00000043336St8sia411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [Source:MGI Symbol;Acc:MGI:106018]
ENSMUSG00000040865ENSMUST00000046020Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000040865ENSMUST00000097718Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
Please email us for questions and/or suggestions
GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation