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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-494-3p (MIMAT0003182)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000003135ENSMUST00000003219D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000003135ENSMUST00000161515D1Bwg0212e11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed [Source:MGI Symbol;Acc:MGI:106580]
ENSMUSG00000004768ENSMUST00000088287Rab2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RAB23, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:99833]
ENSMUSG00000004768ENSMUST00000115174Rab2311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RAB23, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:99833]
ENSMUSG00000004872ENSMUST00000087086Pax311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 3 [Source:MGI Symbol;Acc:MGI:97487]
ENSMUSG00000005886ENSMUST00000068304Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000081713Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000006301ENSMUST00000016309Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006301ENSMUST00000113796Tmbim121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000010175ENSMUST00000010319Prox111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
prospero-related homeobox 1 [Source:MGI Symbol;Acc:MGI:97772]
ENSMUSG00000025949ENSMUST00000097707Pikfyve11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphoinositide kinase, FYVE finger containing [Source:MGI Symbol;Acc:MGI:1335106]
ENSMUSG00000025969ENSMUST00000027112Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000063594Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000075144Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000102822Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114155Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114157Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000026031ENSMUST00000114313Cflar11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CASP8 and FADD-like apoptosis regulator [Source:MGI Symbol;Acc:MGI:1336166]
ENSMUSG00000026069ENSMUST00000053043Il1rl111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 1 receptor-like 1 [Source:MGI Symbol;Acc:MGI:98427]
ENSMUSG00000026069ENSMUST00000097772Il1rl111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 1 receptor-like 1 [Source:MGI Symbol;Acc:MGI:98427]
ENSMUSG00000026070ENSMUST00000097771Il18r111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 18 receptor 1 [Source:MGI Symbol;Acc:MGI:105383]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026123ENSMUST00000027297Plekhb211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
pleckstrin homology domain containing, family B (evectins) member 2 [Source:MGI Symbol;Acc:MGI:2385825]
ENSMUSG00000026131ENSMUST00000097785Dst11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026131ENSMUST00000097786Dst11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dystonin [Source:MGI Symbol;Acc:MGI:104627]
ENSMUSG00000026156ENSMUST00000063663B3gat211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:MGI Symbol;Acc:MGI:2389490]
ENSMUSG00000026158ENSMUST00000027343Ogfrl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
opioid growth factor receptor-like 1 [Source:MGI Symbol;Acc:MGI:1917405]
ENSMUSG00000026201ENSMUST00000027401Stk1611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 16 [Source:MGI Symbol;Acc:MGI:1313271]
ENSMUSG00000026219ENSMUST00000027421Trip1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thyroid hormone receptor interactor 12 [Source:MGI Symbol;Acc:MGI:1309481]
ENSMUSG00000026342ENSMUST00000027580Slc35f511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 35, member F5 [Source:MGI Symbol;Acc:MGI:1921400]
ENSMUSG00000026361ENSMUST00000018337Cdc7321ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2384876]
ENSMUSG00000026395ENSMUST00000027645Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000081416Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112036Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112038Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026407ENSMUST00000112068Cacna1s11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, L type, alpha 1S subunit [Source:MGI Symbol;Acc:MGI:88294]
ENSMUSG00000026436ENSMUST00000086556Elk411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ELK4, member of ETS oncogene family [Source:MGI Symbol;Acc:MGI:102853]
ENSMUSG00000026464ENSMUST00000027736Zc3h11a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger CCCH type containing 11A [Source:MGI Symbol;Acc:MGI:1917829]
ENSMUSG00000026565ENSMUST00000160260Pou2f111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
POU domain, class 2, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101898]
ENSMUSG00000026594ENSMUST00000063199Ralgps221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
ENSMUSG00000026594ENSMUST00000165172Ralgps221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
ENSMUSG00000026594ENSMUST00000171292Ralgps221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
ENSMUSG00000026600ENSMUST00000051396Soat111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
sterol O-acyltransferase 1 [Source:MGI Symbol;Acc:MGI:104665]
ENSMUSG00000026609ENSMUST00000027905Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026609ENSMUST00000060479Ush2a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Usher syndrome 2A (autosomal recessive, mild) homolog (human) [Source:MGI Symbol;Acc:MGI:1341292]
ENSMUSG00000026621ENSMUST00000048462Mosc111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MOCO sulphurase C-terminal domain containing 1 [Source:MGI Symbol;Acc:MGI:1913362]
ENSMUSG00000026638ENSMUST00000076521Irf611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interferon regulatory factor 6 [Source:MGI Symbol;Acc:MGI:1859211]
ENSMUSG00000026701ENSMUST00000071718Prdx611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peroxiredoxin 6 [Source:MGI Symbol;Acc:MGI:894320]
ENSMUSG00000032487ENSMUST00000035065Ptgs211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prostaglandin-endoperoxide synthase 2 [Source:MGI Symbol;Acc:MGI:97798]
ENSMUSG00000032649ENSMUST00000044311Glt25d211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glycosyltransferase 25 domain containing 2 [Source:MGI Symbol;Acc:MGI:2138232]
ENSMUSG00000032908ENSMUST00000036172Sgpp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
sphingosine-1-phosphate phosphotase 2 [Source:MGI Symbol;Acc:MGI:3589109]
ENSMUSG00000037408ENSMUST00000153128Cnnm411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M4 [Source:MGI Symbol;Acc:MGI:2151060]
ENSMUSG00000038305ENSMUST00000041978Spats2l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
spermatogenesis associated, serine-rich 2-like [Source:MGI Symbol;Acc:MGI:1914448]
ENSMUSG00000038305ENSMUST00000167085Spats2l11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
spermatogenesis associated, serine-rich 2-like [Source:MGI Symbol;Acc:MGI:1914448]
ENSMUSG00000038331ENSMUST00000114415Satb211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
special AT-rich sequence binding protein 2 [Source:MGI Symbol;Acc:MGI:2679336]
ENSMUSG00000038463ENSMUST00000046792Olfml2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactomedin-like 2B [Source:MGI Symbol;Acc:MGI:2443310]
ENSMUSG00000038473ENSMUST00000160456Nos1ap11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nitric oxide synthase 1 (neuronal) adaptor protein [Source:MGI Symbol;Acc:MGI:1917979]
ENSMUSG00000038733ENSMUST00000111053Wdr2611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat domain 26 [Source:MGI Symbol;Acc:MGI:1923825]
ENSMUSG00000038733ENSMUST00000162819Wdr2611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat domain 26 [Source:MGI Symbol;Acc:MGI:1923825]
ENSMUSG00000039377ENSMUST00000048572Hlx11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
H2.0-like homeobox [Source:MGI Symbol;Acc:MGI:96109]
ENSMUSG00000039384ENSMUST00000048655Dusp1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dual specificity phosphatase 10 [Source:MGI Symbol;Acc:MGI:1927070]
ENSMUSG00000040423ENSMUST00000161609Rc3h111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
ENSMUSG00000040612ENSMUST00000111416Ildr211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
ENSMUSG00000040710ENSMUST00000043336St8sia411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [Source:MGI Symbol;Acc:MGI:106018]
ENSMUSG00000040713ENSMUST00000111432Creg111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cellular repressor of E1A-stimulated genes 1 [Source:MGI Symbol;Acc:MGI:1344382]
ENSMUSG00000040865ENSMUST00000097718Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000040865ENSMUST00000165066Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000040865ENSMUST00000172416Ino80d11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
INO80 complex subunit D [Source:MGI Symbol;Acc:MGI:3027003]
ENSMUSG00000041779ENSMUST00000037998Tram211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocating chain-associating membrane protein 2 [Source:MGI Symbol;Acc:MGI:1924817]
ENSMUSG00000042115ENSMUST00000046071Klhdc8a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
kelch domain containing 8A [Source:MGI Symbol;Acc:MGI:2442630]
ENSMUSG00000042197ENSMUST00000044455Zfp45111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger protein 451 [Source:MGI Symbol;Acc:MGI:2137896]
ENSMUSG00000042671ENSMUST00000041776Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000042671ENSMUST00000111810Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000042671ENSMUST00000111812Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000042772ENSMUST00000073441Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000042772ENSMUST00000111836Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000042772ENSMUST00000164030Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000045216ENSMUST00000088174Hs6st111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
heparan sulfate 6-O-sulfotransferase 1 [Source:MGI Symbol;Acc:MGI:1354958]
ENSMUSG00000045515ENSMUST00000054883Pou3f311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
ENSMUSG00000048874ENSMUST00000088310Phf311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
PHD finger protein 3 [Source:MGI Symbol;Acc:MGI:2446126]
ENSMUSG00000048874ENSMUST00000166261Phf311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
PHD finger protein 3 [Source:MGI Symbol;Acc:MGI:2446126]
ENSMUSG00000055067ENSMUST00000128302Smyd311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SET and MYND domain containing 3 [Source:MGI Symbol;Acc:MGI:1916976]
ENSMUSG00000055980ENSMUST00000069799Irs111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin receptor substrate 1 [Source:MGI Symbol;Acc:MGI:99454]
ENSMUSG00000057363ENSMUST00000126008Uxs111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
UDP-glucuronate decarboxylase 1 [Source:MGI Symbol;Acc:MGI:1915133]
ENSMUSG00000059149ENSMUST00000126927Mfsd411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
major facilitator superfamily domain containing 4 [Source:MGI Symbol;Acc:MGI:2442786]
ENSMUSG00000059371ENSMUST00000080831Olfr42711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 427 [Source:MGI Symbol;Acc:MGI:3030261]
ENSMUSG00000064302ENSMUST00000049404Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000064302ENSMUST00000070989Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000064302ENSMUST00000165223Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000066800ENSMUST00000086209Rnasel11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) [Source:MGI Symbol;Acc:MGI:1098272]
ENSMUSG00000001823ENSMUST00000001878Hoxd1212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
homeobox D12 [Source:MGI Symbol;Acc:MGI:96204]
ENSMUSG00000002107ENSMUST00000114924Celf222ReverseView as cDNA map |
View as Table
Internal |
Ensembl
CUGBP, Elav-like family member 2 [Source:MGI Symbol;Acc:MGI:1338822]
ENSMUSG00000002107ENSMUST00000114934Celf212ReverseView as cDNA map |
View as Table
Internal |
Ensembl
CUGBP, Elav-like family member 2 [Source:MGI Symbol;Acc:MGI:1338822]
ENSMUSG00000003283ENSMUST00000003370Hck12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
hemopoietic cell kinase [Source:MGI Symbol;Acc:MGI:96052]
ENSMUSG00000003283ENSMUST00000109799Hck12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
hemopoietic cell kinase [Source:MGI Symbol;Acc:MGI:96052]
ENSMUSG00000004085ENSMUST00000144111B230120H23Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA B230120H23 gene [Source:MGI Symbol;Acc:MGI:2443258]
ENSMUSG00000004113ENSMUST00000070864Cacna1b12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:MGI Symbol;Acc:MGI:88296]
ENSMUSG00000004113ENSMUST00000102939Cacna1b12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:MGI Symbol;Acc:MGI:88296]
ENSMUSG00000005804ENSMUST00000005954Pldn12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
pallidin [Source:MGI Symbol;Acc:MGI:1927580]
ENSMUSG00000008226ENSMUST00000112050Scrn312ForwardView as cDNA map |
View as Table
Internal |
Ensembl
secernin 3 [Source:MGI Symbol;Acc:MGI:1921866]
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We gratefully acknowledge support of this work by the William M. Keck Foundation