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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-31-3p (MIMAT0004634)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000000817ENSMUST00000000834Fasl11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Fas ligand (TNF superfamily, member 6) [Source:MGI Symbol;Acc:MGI:99255]
ENSMUSG00000001143ENSMUST00000115011Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000001143ENSMUST00000125304Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000001305ENSMUST00000001339Rrp1511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ribosomal RNA processing 15 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914473]
ENSMUSG00000002459ENSMUST00000118000Rgs2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 20 [Source:MGI Symbol;Acc:MGI:1929866]
ENSMUSG00000002881ENSMUST00000069792Nab111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Ngfi-A binding protein 1 [Source:MGI Symbol;Acc:MGI:107564]
ENSMUSG00000003134ENSMUST00000054462Tbc1d811ReverseView as cDNA map |
View as Table
Internal |
Ensembl
TBC1 domain family, member 8 [Source:MGI Symbol;Acc:MGI:1927225]
ENSMUSG00000003458ENSMUST00000003550Ncstn11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nicastrin [Source:MGI Symbol;Acc:MGI:1891700]
ENSMUSG00000003721ENSMUST00000003818Insig231ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000071064Insig231ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000159085Insig231ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000003721ENSMUST00000160968Insig231ReverseView as cDNA map |
View as Table
Internal |
Ensembl
insulin induced gene 2 [Source:MGI Symbol;Acc:MGI:1920249]
ENSMUSG00000004364ENSMUST00000163119Cul311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cullin 3 [Source:MGI Symbol;Acc:MGI:1347360]
ENSMUSG00000004364ENSMUST00000164108Cul311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cullin 3 [Source:MGI Symbol;Acc:MGI:1347360]
ENSMUSG00000004709ENSMUST00000004829Cd24421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD244 natural killer cell receptor 2B4 [Source:MGI Symbol;Acc:MGI:109294]
ENSMUSG00000004880ENSMUST00000005003Lbr21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lamin B receptor [Source:MGI Symbol;Acc:MGI:2138281]
ENSMUSG00000005677ENSMUST00000005820Nr1i311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor subfamily 1, group I, member 3 [Source:MGI Symbol;Acc:MGI:1346307]
ENSMUSG00000005677ENSMUST00000111328Nr1i311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor subfamily 1, group I, member 3 [Source:MGI Symbol;Acc:MGI:1346307]
ENSMUSG00000005763ENSMUST00000005907Cd24711ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD247 antigen [Source:MGI Symbol;Acc:MGI:88334]
ENSMUSG00000005886ENSMUST00000068304Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000005886ENSMUST00000081713Ncoa211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nuclear receptor coactivator 2 [Source:MGI Symbol;Acc:MGI:1276533]
ENSMUSG00000006005ENSMUST00000064506Tpr11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
translocated promoter region [Source:MGI Symbol;Acc:MGI:1922066]
ENSMUSG00000006005ENSMUST00000119161Tpr11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
translocated promoter region [Source:MGI Symbol;Acc:MGI:1922066]
ENSMUSG00000006010ENSMUST00000111913BC00333111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cDNA sequence BC003331 [Source:MGI Symbol;Acc:MGI:2385108]
ENSMUSG00000006301ENSMUST00000016309Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006301ENSMUST00000113796Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006403ENSMUST00000006570Adamts461ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111314Adamts441ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111315Adamts461ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006412ENSMUST00000135941Pfdn211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prefoldin 2 [Source:MGI Symbol;Acc:MGI:1276111]
ENSMUSG00000006538ENSMUST00000006713Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000006538ENSMUST00000164097Ihh11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Indian hedgehog [Source:MGI Symbol;Acc:MGI:96533]
ENSMUSG00000008136ENSMUST00000008280Fhl211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
four and a half LIM domains 2 [Source:MGI Symbol;Acc:MGI:1338762]
ENSMUSG00000009418ENSMUST00000040599Nav121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neuron navigator 1 [Source:MGI Symbol;Acc:MGI:2183683]
ENSMUSG00000009905ENSMUST00000010049Kdsr11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
3-ketodihydrosphingosine reductase [Source:MGI Symbol;Acc:MGI:1918000]
ENSMUSG00000009907ENSMUST00000094646Vps4b21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
vacuolar protein sorting 4b (yeast) [Source:MGI Symbol;Acc:MGI:1100499]
ENSMUSG00000014602ENSMUST00000112958Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000168448Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171556Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000014602ENSMUST00000171796Kif1a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kinesin family member 1A [Source:MGI Symbol;Acc:MGI:108391]
ENSMUSG00000015316ENSMUST00000015460Slamf111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
signaling lymphocytic activation molecule family member 1 [Source:MGI Symbol;Acc:MGI:1351314]
ENSMUSG00000015843ENSMUST00000015987Rxrg21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111380Rxrg21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111384Rxrg21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111386Rxrg21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000016181ENSMUST00000085555Diexf11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
digestive organ expansion factor homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:2138080]
ENSMUSG00000016528ENSMUST00000016672Mapkapk211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
MAP kinase-activated protein kinase 2 [Source:MGI Symbol;Acc:MGI:109298]
ENSMUSG00000019699ENSMUST00000111159Akt311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thymoma viral proto-oncogene 3 [Source:MGI Symbol;Acc:MGI:1345147]
ENSMUSG00000019699ENSMUST00000111160Akt311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thymoma viral proto-oncogene 3 [Source:MGI Symbol;Acc:MGI:1345147]
ENSMUSG00000025777ENSMUST00000026879Gdap111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ganglioside-induced differentiation-associated-protein 1 [Source:MGI Symbol;Acc:MGI:1338002]
ENSMUSG00000025900ENSMUST00000027032Rp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
retinitis pigmentosa 1 (human) [Source:MGI Symbol;Acc:MGI:1341105]
ENSMUSG00000025900ENSMUST00000115540Rp111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
retinitis pigmentosa 1 (human) [Source:MGI Symbol;Acc:MGI:1341105]
ENSMUSG00000025911ENSMUST00000144177Adhfe111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
alcohol dehydrogenase, iron containing, 1 [Source:MGI Symbol;Acc:MGI:1923437]
ENSMUSG00000025921ENSMUST00000027053Rdh1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinol dehydrogenase 10 (all-trans) [Source:MGI Symbol;Acc:MGI:1924238]
ENSMUSG00000025927ENSMUST00000064976Tcfap2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transcription factor AP-2 beta [Source:MGI Symbol;Acc:MGI:104672]
ENSMUSG00000025933ENSMUST00000027064Tmem14a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 14A [Source:MGI Symbol;Acc:MGI:1922962]
ENSMUSG00000025938ENSMUST00000171848Slco5a111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier organic anion transporter family, member 5A1 [Source:MGI Symbol;Acc:MGI:2443431]
ENSMUSG00000025956ENSMUST00000053469Mettl21a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
methyltransferase like 21A [Source:MGI Symbol;Acc:MGI:1914349]
ENSMUSG00000025956ENSMUST00000114079Mettl21a21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
methyltransferase like 21A [Source:MGI Symbol;Acc:MGI:1914349]
ENSMUSG00000025958ENSMUST00000049932Creb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cAMP responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:88494]
ENSMUSG00000025958ENSMUST00000087366Creb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cAMP responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:88494]
ENSMUSG00000025958ENSMUST00000171164Creb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cAMP responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:88494]
ENSMUSG00000025958ENSMUST00000171369Creb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cAMP responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:88494]
ENSMUSG00000025962ENSMUST00000027103Fastkd211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
FAST kinase domains 2 [Source:MGI Symbol;Acc:MGI:1922869]
ENSMUSG00000025964ENSMUST00000087374Adam2321ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000097717Adam2321ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000114107Adam2321ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025964ENSMUST00000141545Adam2321ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin and metallopeptidase domain 23 [Source:MGI Symbol;Acc:MGI:1345162]
ENSMUSG00000025968ENSMUST00000027111Ndufs111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
NADH dehydrogenase (ubiquinone) Fe-S protein 1 [Source:MGI Symbol;Acc:MGI:2443241]
ENSMUSG00000025968ENSMUST00000168099Ndufs111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
NADH dehydrogenase (ubiquinone) Fe-S protein 1 [Source:MGI Symbol;Acc:MGI:2443241]
ENSMUSG00000025971ENSMUST000000271149430016H08Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 9430016H08 gene [Source:MGI Symbol;Acc:MGI:1915365]
ENSMUSG00000025978ENSMUST00000027121Rftn211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
raftlin family member 2 [Source:MGI Symbol;Acc:MGI:1921263]
ENSMUSG00000025983ENSMUST00000027128Ccdc15011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
coiled-coil domain containing 150 [Source:MGI Symbol;Acc:MGI:1925266]
ENSMUSG00000025986ENSMUST00000027131Slc39a1011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 39 (zinc transporter), member 10 [Source:MGI Symbol;Acc:MGI:1914515]
ENSMUSG00000025991ENSMUST00000027144Cps111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
carbamoyl-phosphate synthetase 1 [Source:MGI Symbol;Acc:MGI:891996]
ENSMUSG00000025997ENSMUST00000027146Ikzf221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026004ENSMUST000000423891110028C15Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1110028C15 gene [Source:MGI Symbol;Acc:MGI:1915941]
ENSMUSG00000026004ENSMUST000001139871110028C15Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1110028C15 gene [Source:MGI Symbol;Acc:MGI:1915941]
ENSMUSG00000026005ENSMUST00000027157Rpe11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ribulose-5-phosphate-3-epimerase [Source:MGI Symbol;Acc:MGI:1913896]
ENSMUSG00000026005ENSMUST00000113995Rpe11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ribulose-5-phosphate-3-epimerase [Source:MGI Symbol;Acc:MGI:1913896]
ENSMUSG00000026017ENSMUST00000168377Carf11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium response factor [Source:MGI Symbol;Acc:MGI:2182269]
ENSMUSG00000026018ENSMUST00000027172Ica1l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
islet cell autoantigen 1-like [Source:MGI Symbol;Acc:MGI:1917625]
ENSMUSG00000026031ENSMUST00000114313Cflar21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CASP8 and FADD-like apoptosis regulator [Source:MGI Symbol;Acc:MGI:1336166]
ENSMUSG00000026032ENSMUST00000027193Ndufb311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 [Source:MGI Symbol;Acc:MGI:1913745]
ENSMUSG00000026039ENSMUST00000027202Sgol211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
shugoshin-like 2 (S. pombe) [Source:MGI Symbol;Acc:MGI:1098767]
ENSMUSG00000026042ENSMUST00000086430Col5a211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
ENSMUSG00000026048ENSMUST00000027214Ercc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:MGI Symbol;Acc:MGI:103582]
ENSMUSG00000026048ENSMUST00000166196Ercc511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
excision repair cross-complementing rodent repair deficiency, complementation group 5 [Source:MGI Symbol;Acc:MGI:103582]
ENSMUSG00000026049ENSMUST000000272151700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001281901700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001336771700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001475711700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001509111700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001522391700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026049ENSMUST000001563921700029F09Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700029F09 gene [Source:MGI Symbol;Acc:MGI:1922873]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026083ENSMUST00000027252Eif5b21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 5B [Source:MGI Symbol;Acc:MGI:2441772]
ENSMUSG00000026094ENSMUST00000027263Stk17b21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine/threonine kinase 17b (apoptosis-inducing) [Source:MGI Symbol;Acc:MGI:2138162]
ENSMUSG00000026096ENSMUST00000027265Osgepl111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
O-sialoglycoprotein endopeptidase-like 1 [Source:MGI Symbol;Acc:MGI:1919335]
ENSMUSG00000026104ENSMUST00000070968Stat111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
signal transducer and activator of transcription 1 [Source:MGI Symbol;Acc:MGI:103063]
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We gratefully acknowledge support of this work by the William M. Keck Foundation