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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-340-5p (MIMAT0004651)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000004880ENSMUST00000005003Lbr11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lamin B receptor [Source:MGI Symbol;Acc:MGI:2138281]
ENSMUSG00000025902ENSMUST00000027035Sox1711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SRY-box containing gene 17 [Source:MGI Symbol;Acc:MGI:107543]
ENSMUSG00000025907ENSMUST00000027040Rb1cc111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RB1-inducible coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1341850]
ENSMUSG00000025915ENSMUST00000166384Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025915ENSMUST00000168907Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025915ENSMUST00000171265Sgk311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
serum/glucocorticoid regulated kinase 3 [Source:MGI Symbol;Acc:MGI:2182368]
ENSMUSG00000025969ENSMUST00000027112Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114155Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025982ENSMUST00000027127Sf3b111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
ENSMUSG00000026142ENSMUST00000027322Rhbdd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
rhomboid domain containing 1 [Source:MGI Symbol;Acc:MGI:1924117]
ENSMUSG00000026142ENSMUST00000165975Rhbdd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
rhomboid domain containing 1 [Source:MGI Symbol;Acc:MGI:1924117]
ENSMUSG00000026153ENSMUST00000027337Fam135a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 135, member A [Source:MGI Symbol;Acc:MGI:1915437]
ENSMUSG00000026153ENSMUST00000097806Fam135a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 135, member A [Source:MGI Symbol;Acc:MGI:1915437]
ENSMUSG00000026174ENSMUST00000087215Rqcd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
rcd1 (required for cell differentiation) homolog 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1928902]
ENSMUSG00000026311ENSMUST00000113020Asb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ankyrin repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1929735]
ENSMUSG00000026311ENSMUST00000163232Asb111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ankyrin repeat and SOCS box-containing 1 [Source:MGI Symbol;Acc:MGI:1929735]
ENSMUSG00000026587ENSMUST00000046110Astn111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
astrotactin 1 [Source:MGI Symbol;Acc:MGI:1098567]
ENSMUSG00000026587ENSMUST00000170718Astn111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
astrotactin 1 [Source:MGI Symbol;Acc:MGI:1098567]
ENSMUSG00000026667ENSMUST00000027979Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026667ENSMUST00000150821Uhmk111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
U2AF homology motif (UHM) kinase 1 [Source:MGI Symbol;Acc:MGI:1341908]
ENSMUSG00000026705ENSMUST00000111611Klhl2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 20 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444855]
ENSMUSG00000026705ENSMUST00000117467Klhl2011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 20 (Drosophila) [Source:MGI Symbol;Acc:MGI:2444855]
ENSMUSG00000034159ENSMUST000000437182310007B03Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2310007B03 gene [Source:MGI Symbol;Acc:MGI:1919124]
ENSMUSG00000034159ENSMUST000001434192310007B03Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2310007B03 gene [Source:MGI Symbol;Acc:MGI:1919124]
ENSMUSG00000040297ENSMUST00000048377AI84810011ReverseView as cDNA map |
View as Table
Internal |
Ensembl
expressed sequence AI848100 [Source:MGI Symbol;Acc:MGI:2138346]
ENSMUSG00000041763ENSMUST00000087933Tpp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tripeptidyl peptidase II [Source:MGI Symbol;Acc:MGI:102724]
ENSMUSG00000043015ENSMUST00000087708Tmem194b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 194B [Source:MGI Symbol;Acc:MGI:2444113]
ENSMUSG00000043015ENSMUST00000165859Tmem194b21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 194B [Source:MGI Symbol;Acc:MGI:2444113]
ENSMUSG00000043015ENSMUST00000168679Tmem194b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 194B [Source:MGI Symbol;Acc:MGI:2444113]
ENSMUSG00000056708ENSMUST00000055322Ier511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
immediate early response 5 [Source:MGI Symbol;Acc:MGI:1337072]
ENSMUSG00000001767ENSMUST00000001818Crnkl112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Crn, crooked neck-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1914127]
ENSMUSG00000017418ENSMUST00000069870Arl5b12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ADP-ribosylation factor-like 5B [Source:MGI Symbol;Acc:MGI:1923119]
ENSMUSG00000017652ENSMUST00000017799Cd4012ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CD40 antigen [Source:MGI Symbol;Acc:MGI:88336]
ENSMUSG00000017950ENSMUST00000018094Hnf4a12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
hepatic nuclear factor 4, alpha [Source:MGI Symbol;Acc:MGI:109128]
ENSMUSG00000017950ENSMUST00000051130Hnf4a12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
hepatic nuclear factor 4, alpha [Source:MGI Symbol;Acc:MGI:109128]
ENSMUSG00000026827ENSMUST00000028167Gpd212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glycerol phosphate dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99778]
ENSMUSG00000026827ENSMUST00000112618Gpd212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glycerol phosphate dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99778]
ENSMUSG00000026827ENSMUST00000169687Gpd212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glycerol phosphate dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99778]
ENSMUSG00000026963ENSMUST00000028340Tmem21012ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
ENSMUSG00000026988ENSMUST00000028368Wdsub112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
ENSMUSG00000026988ENSMUST00000102751Wdsub112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
ENSMUSG00000026988ENSMUST00000128671Wdsub112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
ENSMUSG00000026988ENSMUST00000140475Wdsub112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
ENSMUSG00000027175ENSMUST00000028597Tcp11l112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
t-complex 11 like 1 [Source:MGI Symbol;Acc:MGI:2444263]
ENSMUSG00000027175ENSMUST00000111118Tcp11l112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
t-complex 11 like 1 [Source:MGI Symbol;Acc:MGI:2444263]
ENSMUSG00000027281ENSMUST000000993112210009G21Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2210009G21 gene [Source:MGI Symbol;Acc:MGI:1921493]
ENSMUSG00000027395ENSMUST00000028874Polr1b12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014]
ENSMUSG00000027395ENSMUST00000103205Polr1b12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
polymerase (RNA) I polypeptide B [Source:MGI Symbol;Acc:MGI:108014]
ENSMUSG00000027641ENSMUST00000029170Rbl112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
retinoblastoma-like 1 (p107) [Source:MGI Symbol;Acc:MGI:103300]
ENSMUSG00000036949ENSMUST00000082290Slc39a1212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 39 (zinc transporter), member 12 [Source:MGI Symbol;Acc:MGI:2139274]
ENSMUSG00000036949ENSMUST00000114731Slc39a1212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 39 (zinc transporter), member 12 [Source:MGI Symbol;Acc:MGI:2139274]
ENSMUSG00000036949ENSMUST00000146424Slc39a1212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 39 (zinc transporter), member 12 [Source:MGI Symbol;Acc:MGI:2139274]
ENSMUSG00000038324ENSMUST00000041059Trpc4ap12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily C, member 4 associated protein [Source:MGI Symbol;Acc:MGI:1930751]
ENSMUSG00000038324ENSMUST00000103140Trpc4ap12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transient receptor potential cation channel, subfamily C, member 4 associated protein [Source:MGI Symbol;Acc:MGI:1930751]
ENSMUSG00000039033ENSMUST00000046656Tasp112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
taspase, threonine aspartase 1 [Source:MGI Symbol;Acc:MGI:1923062]
ENSMUSG00000039033ENSMUST00000099304Tasp112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
taspase, threonine aspartase 1 [Source:MGI Symbol;Acc:MGI:1923062]
ENSMUSG00000039033ENSMUST00000110079Tasp112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
taspase, threonine aspartase 1 [Source:MGI Symbol;Acc:MGI:1923062]
ENSMUSG00000039046ENSMUST00000114937Usp6nl12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
USP6 N-terminal like [Source:MGI Symbol;Acc:MGI:2138893]
ENSMUSG00000039678ENSMUST00000044556Tbc1d1312ForwardView as cDNA map |
View as Table
Internal |
Ensembl
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
ENSMUSG00000039725ENSMUST000000390072810408M09Rik12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2810408M09 gene [Source:MGI Symbol;Acc:MGI:1918294]
ENSMUSG00000042155ENSMUST00000053087Klhl2312ForwardView as cDNA map |
View as Table
Internal |
Ensembl
kelch-like 23 (Drosophila) [Source:MGI Symbol;Acc:MGI:2683536]
ENSMUSG00000042854ENSMUST00000151826Trp53rk12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transformation related protein 53 regulating kinase [Source:MGI Symbol;Acc:MGI:1914050]
ENSMUSG00000061411ENSMUST000000353468430427H17Rik12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 8430427H17 gene [Source:MGI Symbol;Acc:MGI:1918765]
ENSMUSG00000061411ENSMUST000001097848430427H17Rik12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 8430427H17 gene [Source:MGI Symbol;Acc:MGI:1918765]
ENSMUSG00000068815ENSMUST00000090708Olfr114312ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1143 [Source:MGI Symbol;Acc:MGI:3030977]
ENSMUSG00000068817ENSMUST00000111568Olfr114012ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1140 [Source:MGI Symbol;Acc:MGI:3030974]
ENSMUSG00000074965ENSMUST00000099619Olfr127712ReverseView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1277 [Source:MGI Symbol;Acc:MGI:3031111]
ENSMUSG00000075126ENSMUST00000099824Olfr118012ReverseView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1180 [Source:MGI Symbol;Acc:MGI:3031014]
ENSMUSG00000075166ENSMUST00000099869Olfr110412ReverseView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1104 [Source:MGI Symbol;Acc:MGI:3030938]
ENSMUSG00000075190ENSMUST00000099895Olfr105412ReverseView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1054 [Source:MGI Symbol;Acc:MGI:3030888]
ENSMUSG00000078923ENSMUST00000109207Ube2v112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ubiquitin-conjugating enzyme E2 variant 1 [Source:MGI Symbol;Acc:MGI:1913839]
ENSMUSG00000089739ENSMUST00000125544Tmem18912ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 189 [Source:MGI Symbol;Acc:MGI:2142624]
ENSMUSG00000005493ENSMUST00000170748Msh413ReverseView as cDNA map |
View as Table
Internal |
Ensembl
mutS homolog 4 (E. coli) [Source:MGI Symbol;Acc:MGI:1860077]
ENSMUSG00000027508ENSMUST00000108384Pag113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phosphoprotein associated with glycosphingolipid microdomains 1 [Source:MGI Symbol;Acc:MGI:2443160]
ENSMUSG00000027508ENSMUST00000161949Pag113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phosphoprotein associated with glycosphingolipid microdomains 1 [Source:MGI Symbol;Acc:MGI:2443160]
ENSMUSG00000027694ENSMUST00000099086Gm832513ForwardView as cDNA map |
View as Table
Internal |
Ensembl
predicted pseudogene 8325 [Source:MGI Symbol;Acc:MGI:3644852]
ENSMUSG00000027751ENSMUST00000029315Fam48a13ForwardView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 48, member A [Source:MGI Symbol;Acc:MGI:1929651]
ENSMUSG00000027803ENSMUST00000029380Wwtr113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WW domain containing transcription regulator 1 [Source:MGI Symbol;Acc:MGI:1917649]
ENSMUSG00000027803ENSMUST00000120977Wwtr113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WW domain containing transcription regulator 1 [Source:MGI Symbol;Acc:MGI:1917649]
ENSMUSG00000027806ENSMUST00000099090Tsc22d213ForwardView as cDNA map |
View as Table
Internal |
Ensembl
TSC22 domain family, member 2 [Source:MGI Symbol;Acc:MGI:1919283]
ENSMUSG00000027808ENSMUST00000029385Serp113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
stress-associated endoplasmic reticulum protein 1 [Source:MGI Symbol;Acc:MGI:92638]
ENSMUSG00000027827ENSMUST00000029413Kcnab113ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, shaker-related subfamily, beta member 1 [Source:MGI Symbol;Acc:MGI:109155]
ENSMUSG00000027827ENSMUST00000161404Kcnab113ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, shaker-related subfamily, beta member 1 [Source:MGI Symbol;Acc:MGI:109155]
ENSMUSG00000027827ENSMUST00000161979Kcnab113ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, shaker-related subfamily, beta member 1 [Source:MGI Symbol;Acc:MGI:109155]
ENSMUSG00000028031ENSMUST00000029665Dkk213ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dickkopf homolog 2 (Xenopus laevis) [Source:MGI Symbol;Acc:MGI:1890663]
ENSMUSG00000036513ENSMUST00000160959Commd213ReverseView as cDNA map |
View as Table
Internal |
Ensembl
COMM domain containing 2 [Source:MGI Symbol;Acc:MGI:1098806]
ENSMUSG00000038092ENSMUST00000044094Hsd3b513ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 [Source:MGI Symbol;Acc:MGI:104645]
ENSMUSG00000041734ENSMUST00000107618Kirrel13ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kin of IRRE like (Drosophila) [Source:MGI Symbol;Acc:MGI:1891396]
ENSMUSG00000041734ENSMUST00000159976Kirrel13ReverseView as cDNA map |
View as Table
Internal |
Ensembl
kin of IRRE like (Drosophila) [Source:MGI Symbol;Acc:MGI:1891396]
ENSMUSG00000042035ENSMUST00000043983Igsf313ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin superfamily, member 3 [Source:MGI Symbol;Acc:MGI:1926158]
ENSMUSG00000044167ENSMUST00000053764Foxo113ForwardView as cDNA map |
View as Table
Internal |
Ensembl
forkhead box O1 [Source:MGI Symbol;Acc:MGI:1890077]
ENSMUSG00000044468ENSMUST00000061455Fam46c13ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 46, member C [Source:MGI Symbol;Acc:MGI:1921895]
ENSMUSG00000046676ENSMUST00000054426Lce1l13ReverseView as cDNA map |
View as Table
Internal |
Ensembl
late cornified envelope 1L [Source:MGI Symbol;Acc:MGI:1920980]
ENSMUSG00000055436ENSMUST00000069025Srsf1113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]
ENSMUSG00000055436ENSMUST00000072875Srsf1113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]
ENSMUSG00000055436ENSMUST00000121326Srsf1113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]
ENSMUSG00000055436ENSMUST00000152274Srsf1113ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]
ENSMUSG00000056351ENSMUST00000060923Hsd3b413ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4 [Source:MGI Symbol;Acc:MGI:96236]
ENSMUSG00000056900ENSMUST00000072312Usp1313ForwardView as cDNA map |
View as Table
Internal |
Ensembl
ubiquitin specific peptidase 13 (isopeptidase T-3) [Source:MGI Symbol;Acc:MGI:1919857]
ENSMUSG00000063273ENSMUST00000029303Naa1513ForwardView as cDNA map |
View as Table
Internal |
Ensembl
N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:MGI Symbol;Acc:MGI:1922088]
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We gratefully acknowledge support of this work by the William M. Keck Foundation