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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-344d-3p (MIMAT0014808)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001143ENSMUST00000115011Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000001143ENSMUST00000125304Lman2l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
lectin, mannose-binding 2-like [Source:MGI Symbol;Acc:MGI:2443010]
ENSMUSG00000002881ENSMUST00000069792Nab111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Ngfi-A binding protein 1 [Source:MGI Symbol;Acc:MGI:107564]
ENSMUSG00000003458ENSMUST00000003550Ncstn11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
nicastrin [Source:MGI Symbol;Acc:MGI:1891700]
ENSMUSG00000004364ENSMUST00000163119Cul311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cullin 3 [Source:MGI Symbol;Acc:MGI:1347360]
ENSMUSG00000006301ENSMUST00000016309Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006301ENSMUST00000113796Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000009418ENSMUST00000040599Nav111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neuron navigator 1 [Source:MGI Symbol;Acc:MGI:2183683]
ENSMUSG00000009905ENSMUST00000010049Kdsr21ReverseView as cDNA map |
View as Table
Internal |
Ensembl
3-ketodihydrosphingosine reductase [Source:MGI Symbol;Acc:MGI:1918000]
ENSMUSG00000015222ENSMUST00000024639Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000077355Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114012Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114013Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114015Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114017Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000114018Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015222ENSMUST00000171377Mtap211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
microtubule-associated protein 2 [Source:MGI Symbol;Acc:MGI:97175]
ENSMUSG00000015961ENSMUST00000016105Adss11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
adenylosuccinate synthetase, non muscle [Source:MGI Symbol;Acc:MGI:87948]
ENSMUSG00000016481ENSMUST00000027918Cr1l11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement component (3b/4b) receptor 1-like [Source:MGI Symbol;Acc:MGI:88513]
ENSMUSG00000016493ENSMUST00000162650Cd4611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
ENSMUSG00000025935ENSMUST00000027068Tram111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
translocating chain-associating membrane protein 1 [Source:MGI Symbol;Acc:MGI:1919515]
ENSMUSG00000025939ENSMUST00000117146Ube2w11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ubiquitin-conjugating enzyme E2W (putative) [Source:MGI Symbol;Acc:MGI:1914049]
ENSMUSG00000025980ENSMUST00000027123Hspd111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
heat shock protein 1 (chaperonin) [Source:MGI Symbol;Acc:MGI:96242]
ENSMUSG00000025997ENSMUST00000027146Ikzf221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
IKAROS family zinc finger 2 [Source:MGI Symbol;Acc:MGI:1342541]
ENSMUSG00000026027ENSMUST00000027185Stradb11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
STE20-related kinase adaptor beta [Source:MGI Symbol;Acc:MGI:2144047]
ENSMUSG00000026070ENSMUST00000097771Il18r111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 18 receptor 1 [Source:MGI Symbol;Acc:MGI:105383]
ENSMUSG00000026083ENSMUST00000027252Eif5b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 5B [Source:MGI Symbol;Acc:MGI:2441772]
ENSMUSG00000026174ENSMUST00000087215Rqcd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
rcd1 (required for cell differentiation) homolog 1 (S. pombe) [Source:MGI Symbol;Acc:MGI:1928902]
ENSMUSG00000026219ENSMUST00000027421Trip1211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thyroid hormone receptor interactor 12 [Source:MGI Symbol;Acc:MGI:1309481]
ENSMUSG00000026229ENSMUST00000027432Psmd111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 [Source:MGI Symbol;Acc:MGI:1917497]
ENSMUSG00000026235ENSMUST00000027451Epha411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Eph receptor A4 [Source:MGI Symbol;Acc:MGI:98277]
ENSMUSG00000026235ENSMUST00000113540Epha411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Eph receptor A4 [Source:MGI Symbol;Acc:MGI:98277]
ENSMUSG00000026245ENSMUST00000068333Farsb11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
phenylalanyl-tRNA synthetase, beta subunit [Source:MGI Symbol;Acc:MGI:1346035]
ENSMUSG00000026321ENSMUST00000027559Tnfrsf11a21ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tumor necrosis factor receptor superfamily, member 11a [Source:MGI Symbol;Acc:MGI:1314891]
ENSMUSG00000026361ENSMUST00000018337Cdc7311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2384876]
ENSMUSG00000026377ENSMUST00000027626Mki67ip11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Mki67 (FHA domain) interacting nucleolar phosphoprotein [Source:MGI Symbol;Acc:MGI:1915199]
ENSMUSG00000026383ENSMUST00000027632Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026383ENSMUST00000052404Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026383ENSMUST00000163147Epb4.1l511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
erythrocyte protein band 4.1-like 5 [Source:MGI Symbol;Acc:MGI:103006]
ENSMUSG00000026395ENSMUST00000027645Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000081416Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112036Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026395ENSMUST00000112038Ptprc11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, C [Source:MGI Symbol;Acc:MGI:97810]
ENSMUSG00000026421ENSMUST00000027677Csrp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cysteine and glycine-rich protein 1 [Source:MGI Symbol;Acc:MGI:88549]
ENSMUSG00000026421ENSMUST00000097561Csrp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cysteine and glycine-rich protein 1 [Source:MGI Symbol;Acc:MGI:88549]
ENSMUSG00000026473ENSMUST00000086199Glul11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
glutamate-ammonia ligase (glutamine synthetase) [Source:MGI Symbol;Acc:MGI:95739]
ENSMUSG00000026578ENSMUST000000278674930455F23Rik11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 4930455F23 gene [Source:MGI Symbol;Acc:MGI:1922145]
ENSMUSG00000026618ENSMUST00000027921Iars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
ENSMUSG00000026618ENSMUST00000110974Iars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
ENSMUSG00000026618ENSMUST00000110975Iars211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
isoleucine-tRNA synthetase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:1919586]
ENSMUSG00000026627ENSMUST00000027940Tmem20611ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 206 [Source:MGI Symbol;Acc:MGI:1914200]
ENSMUSG00000026683ENSMUST00000028000Nuf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914227]
ENSMUSG00000026683ENSMUST00000111368Nuf211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914227]
ENSMUSG00000027520ENSMUST00000029025Zdbf211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, DBF-type containing 2 [Source:MGI Symbol;Acc:MGI:1921134]
ENSMUSG00000027520ENSMUST00000114132Zdbf211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger, DBF-type containing 2 [Source:MGI Symbol;Acc:MGI:1921134]
ENSMUSG00000033557ENSMUST00000086153Fam20b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 20, member B [Source:MGI Symbol;Acc:MGI:2443990]
ENSMUSG00000033557ENSMUST00000122424Fam20b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 20, member B [Source:MGI Symbol;Acc:MGI:2443990]
ENSMUSG00000033964ENSMUST00000039867Zbtb4111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger and BTB domain containing 41 homolog [Source:MGI Symbol;Acc:MGI:2444487]
ENSMUSG00000037375ENSMUST00000110841Hhat11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hedgehog acyltransferase [Source:MGI Symbol;Acc:MGI:2444681]
ENSMUSG00000037375ENSMUST00000154203Hhat11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
hedgehog acyltransferase [Source:MGI Symbol;Acc:MGI:2444681]
ENSMUSG00000037447ENSMUST00000115032Arid5a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
AT rich interactive domain 5A (MRF1-like) [Source:MGI Symbol;Acc:MGI:2443039]
ENSMUSG00000037509ENSMUST00000047664Arhgef421ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Rho guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:2442507]
ENSMUSG00000037509ENSMUST00000159747Arhgef411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
Rho guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:2442507]
ENSMUSG00000038174ENSMUST00000161600Fam126b11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 126, member B [Source:MGI Symbol;Acc:MGI:1098784]
ENSMUSG00000038463ENSMUST00000046792Olfml2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactomedin-like 2B [Source:MGI Symbol;Acc:MGI:2443310]
ENSMUSG00000038733ENSMUST00000111053Wdr2611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat domain 26 [Source:MGI Symbol;Acc:MGI:1923825]
ENSMUSG00000038733ENSMUST00000162819Wdr2611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
WD repeat domain 26 [Source:MGI Symbol;Acc:MGI:1923825]
ENSMUSG00000039630ENSMUST00000161769Hnrnpu11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
ENSMUSG00000040596ENSMUST00000111411Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040596ENSMUST00000131487Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040596ENSMUST00000169324Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040648ENSMUST00000112845Ppip5k211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
diphosphoinositol pentakisphosphate kinase 2 [Source:MGI Symbol;Acc:MGI:2142810]
ENSMUSG00000041040ENSMUST00000036540Fam117b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 117, member B [Source:MGI Symbol;Acc:MGI:1920000]
ENSMUSG00000041670ENSMUST00000081544Rims111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]
ENSMUSG00000041670ENSMUST00000097809Rims111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]
ENSMUSG00000041670ENSMUST00000097810Rims111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]
ENSMUSG00000041670ENSMUST00000097811Rims111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]
ENSMUSG00000041670ENSMUST00000115273Rims111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulating synaptic membrane exocytosis 1 [Source:MGI Symbol;Acc:MGI:2152971]
ENSMUSG00000042066ENSMUST00000045473Tmcc211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane and coiled-coil domains 2 [Source:MGI Symbol;Acc:MGI:1916125]
ENSMUSG00000042066ENSMUST00000132435Tmcc211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane and coiled-coil domains 2 [Source:MGI Symbol;Acc:MGI:1916125]
ENSMUSG00000042066ENSMUST00000142609Tmcc211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane and coiled-coil domains 2 [Source:MGI Symbol;Acc:MGI:1916125]
ENSMUSG00000042229ENSMUST00000047978Rabif11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RAB interacting factor [Source:MGI Symbol;Acc:MGI:2138605]
ENSMUSG00000042751ENSMUST00000043313Nmnat211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
nicotinamide nucleotide adenylyltransferase 2 [Source:MGI Symbol;Acc:MGI:2444155]
ENSMUSG00000045174ENSMUST00000052670Fam123c11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 123, member C [Source:MGI Symbol;Acc:MGI:3026939]
ENSMUSG00000047496ENSMUST00000058688Rnf15211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ring finger protein 152 [Source:MGI Symbol;Acc:MGI:2443787]
ENSMUSG00000047496ENSMUST00000172299Rnf15211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ring finger protein 152 [Source:MGI Symbol;Acc:MGI:2443787]
ENSMUSG00000047793ENSMUST00000062202Sned111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
ENSMUSG00000050069ENSMUST00000055294Grem221ReverseView as cDNA map |
View as Table
Internal |
Ensembl
gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis) [Source:MGI Symbol;Acc:MGI:1344367]
ENSMUSG00000051951ENSMUST00000070533Xkr411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
X Kell blood group precursor related family member 4 [Source:MGI Symbol;Acc:MGI:3528744]
ENSMUSG00000051985ENSMUST00000166193Igfn111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like and fibronectin type III domain containing 1 [Source:MGI Symbol;Acc:MGI:3045352]
ENSMUSG00000052558ENSMUST00000064487Gm988411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 9884 [Source:MGI Symbol;Acc:MGI:3642830]
ENSMUSG00000055322ENSMUST00000050681Tns111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
tensin 1 [Source:MGI Symbol;Acc:MGI:104552]
ENSMUSG00000055322ENSMUST00000169786Tns121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
tensin 1 [Source:MGI Symbol;Acc:MGI:104552]
ENSMUSG00000055322ENSMUST00000171899Tns121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
tensin 1 [Source:MGI Symbol;Acc:MGI:104552]
ENSMUSG00000055567ENSMUST00000061620Unc8011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-80 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:2652882]
ENSMUSG00000058904ENSMUST00000074859Olfr141311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1413 [Source:MGI Symbol;Acc:MGI:3031247]
ENSMUSG00000063681ENSMUST00000059825Crb111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
crumbs homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2136343]
ENSMUSG00000066755ENSMUST00000086084Tnfsf1811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tumor necrosis factor (ligand) superfamily, member 18 [Source:MGI Symbol;Acc:MGI:2673064]
ENSMUSG00000070643ENSMUST00000144386Sox1311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
SRY-box containing gene 13 [Source:MGI Symbol;Acc:MGI:98361]
ENSMUSG00000073490ENSMUST00000042610AI60787311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
expressed sequence AI607873 [Source:MGI Symbol;Acc:MGI:2138302]
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We gratefully acknowledge support of this work by the William M. Keck Foundation