Back to main page

Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-196a-1-3p (MIMAT0017013)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


Please hold, your search is in progress...
TIP! If you show ALL results, you'll be able to dynamically sort by one or multiple columns (hold shift)
TIP! You can save this HTML file locally by going to File->Save As if you want to access it quickly later on


Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000001138ENSMUST00000001166Cnnm311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin M3 [Source:MGI Symbol;Acc:MGI:2151055]
ENSMUSG00000006403ENSMUST00000006570Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111314Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111315Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000015484ENSMUST00000015628Fam163a11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 163, member A [Source:MGI Symbol;Acc:MGI:3618859]
ENSMUSG00000025907ENSMUST00000027040Rb1cc121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RB1-inducible coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1341850]
ENSMUSG00000025982ENSMUST00000027127Sf3b111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
ENSMUSG00000026072ENSMUST00000027241Il1r111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
interleukin 1 receptor, type I [Source:MGI Symbol;Acc:MGI:96545]
ENSMUSG00000026111ENSMUST00000027285Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026111ENSMUST00000114925Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026111ENSMUST00000118059Unc5011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-50 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:1914637]
ENSMUSG00000026339ENSMUST00000036025Ccdc9321ForwardView as cDNA map |
View as Table
Internal |
Ensembl
coiled-coil domain containing 93 [Source:MGI Symbol;Acc:MGI:1918079]
ENSMUSG00000026360ENSMUST00000127206Rgs211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 2 [Source:MGI Symbol;Acc:MGI:1098271]
ENSMUSG00000026434ENSMUST00000062264Nucks111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
ENSMUSG00000026502ENSMUST00000027783Pppde111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
PPPDE peptidase domain containing 1 [Source:MGI Symbol;Acc:MGI:1926075]
ENSMUSG00000026640ENSMUST00000027952Plxna211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
plexin A2 [Source:MGI Symbol;Acc:MGI:107684]
ENSMUSG00000026673ENSMUST00000027984Sh2d1b121ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SH2 domain protein 1B1 [Source:MGI Symbol;Acc:MGI:1349420]
ENSMUSG00000037216ENSMUST00000041621Lipt111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
lipoyltransferase 1 [Source:MGI Symbol;Acc:MGI:3645211]
ENSMUSG00000038026ENSMUST00000062387Kcnj911ReverseView as cDNA map |
View as Table
Internal |
Ensembl
potassium inwardly-rectifying channel, subfamily J, member 9 [Source:MGI Symbol;Acc:MGI:108007]
ENSMUSG00000038463ENSMUST00000046792Olfml2b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactomedin-like 2B [Source:MGI Symbol;Acc:MGI:2443310]
ENSMUSG00000039377ENSMUST00000048572Hlx11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
H2.0-like homeobox [Source:MGI Symbol;Acc:MGI:96109]
ENSMUSG00000039384ENSMUST00000048655Dusp1011ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dual specificity phosphatase 10 [Source:MGI Symbol;Acc:MGI:1927070]
ENSMUSG00000040423ENSMUST00000161609Rc3h111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
ENSMUSG00000041144ENSMUST00000094964Dnahc7b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
ENSMUSG00000042197ENSMUST00000044455Zfp45111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger protein 451 [Source:MGI Symbol;Acc:MGI:2137896]
ENSMUSG00000042671ENSMUST00000041776Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000042671ENSMUST00000111810Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000042671ENSMUST00000111812Rgs811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
regulator of G-protein signaling 8 [Source:MGI Symbol;Acc:MGI:108408]
ENSMUSG00000043015ENSMUST00000165859Tmem194b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane protein 194B [Source:MGI Symbol;Acc:MGI:2444113]
ENSMUSG00000043629ENSMUST000000505671700019D03Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700019D03 gene [Source:MGI Symbol;Acc:MGI:1914330]
ENSMUSG00000043629ENSMUST000001144921700019D03Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700019D03 gene [Source:MGI Symbol;Acc:MGI:1914330]
ENSMUSG00000043629ENSMUST000001144931700019D03Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1700019D03 gene [Source:MGI Symbol;Acc:MGI:1914330]
ENSMUSG00000047180ENSMUST00000056946Neurl311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
neuralized homolog 3 homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:2429944]
ENSMUSG00000050967ENSMUST00000053355Creg211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cellular repressor of E1A-stimulated genes 2 [Source:MGI Symbol;Acc:MGI:1928333]
ENSMUSG00000051985ENSMUST00000166193Igfn111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin-like and fibronectin type III domain containing 1 [Source:MGI Symbol;Acc:MGI:3045352]
ENSMUSG00000052428ENSMUST00000097473Tmco131ForwardView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane and coiled-coil domains 1 [Source:MGI Symbol;Acc:MGI:1921173]
ENSMUSG00000057464ENSMUST00000071521Olfr141511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1415 [Source:MGI Symbol;Acc:MGI:3031249]
ENSMUSG00000058248ENSMUST00000078470Kcnh111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
ENSMUSG00000058248ENSMUST00000110844Kcnh111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
ENSMUSG00000058904ENSMUST00000074859Olfr141311ForwardView as cDNA map |
View as Table
Internal |
Ensembl
olfactory receptor 1413 [Source:MGI Symbol;Acc:MGI:3031247]
ENSMUSG00000063681ENSMUST00000059825Crb111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
crumbs homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2136343]
ENSMUSG00000064302ENSMUST00000049404Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000064302ENSMUST00000070989Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000064302ENSMUST00000165223Clasp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
ENSMUSG00000073678ENSMUST00000097739Pgap111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
post-GPI attachment to proteins 1 [Source:MGI Symbol;Acc:MGI:2443342]
ENSMUSG00000091318ENSMUST00000171322Gm541511ReverseView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 5415 [Source:MGI Symbol;Acc:MGI:3644687]
ENSMUSG00000000876ENSMUST00000000896Pxmp412ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peroxisomal membrane protein 4 [Source:MGI Symbol;Acc:MGI:1891701]
ENSMUSG00000004085ENSMUST00000144111B230120H23Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA B230120H23 gene [Source:MGI Symbol;Acc:MGI:2443258]
ENSMUSG00000004105ENSMUST00000004208Angptl212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
angiopoietin-like 2 [Source:MGI Symbol;Acc:MGI:1347002]
ENSMUSG00000014077ENSMUST000000142211500003O03Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1500003O03 gene [Source:MGI Symbol;Acc:MGI:1927185]
ENSMUSG00000014077ENSMUST000001191721500003O03Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 1500003O03 gene [Source:MGI Symbol;Acc:MGI:1927185]
ENSMUSG00000016256ENSMUST00000016400Ctsz12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cathepsin Z [Source:MGI Symbol;Acc:MGI:1891190]
ENSMUSG00000016257ENSMUST00000016401Slmo212ReverseView as cDNA map |
View as Table
Internal |
Ensembl
slowmo homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1913640]
ENSMUSG00000025817ENSMUST00000026927Nudt512ForwardView as cDNA map |
View as Table
Internal |
Ensembl
nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Source:MGI Symbol;Acc:MGI:1858232]
ENSMUSG00000026740ENSMUST00000091418Dnajc112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:MGI Symbol;Acc:MGI:103268]
ENSMUSG00000026740ENSMUST00000166495Dnajc112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:MGI Symbol;Acc:MGI:103268]
ENSMUSG00000026767ENSMUST00000028105Fam188a12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
family with sequence similarity 188, member A [Source:MGI Symbol;Acc:MGI:1914210]
ENSMUSG00000026778ENSMUST00000028118Prkcq12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein kinase C, theta [Source:MGI Symbol;Acc:MGI:97601]
ENSMUSG00000026778ENSMUST00000170702Prkcq12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
protein kinase C, theta [Source:MGI Symbol;Acc:MGI:97601]
ENSMUSG00000026792ENSMUST00000127321Lrsam112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
ENSMUSG00000026834ENSMUST00000028178Acvr1c12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
ENSMUSG00000026834ENSMUST00000100085Acvr1c12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
ENSMUSG00000026834ENSMUST00000112607Acvr1c12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
ENSMUSG00000026834ENSMUST00000112608Acvr1c12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
ENSMUSG00000026870ENSMUST00000028228D730039F16Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
ENSMUSG00000026870ENSMUST00000113068D730039F16Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
ENSMUSG00000026870ENSMUST00000168663D730039F16Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
ENSMUSG00000027009ENSMUST00000028395Itga412ForwardView as cDNA map |
View as Table
Internal |
Ensembl
integrin alpha 4 [Source:MGI Symbol;Acc:MGI:96603]
ENSMUSG00000027009ENSMUST00000099972Itga412ForwardView as cDNA map |
View as Table
Internal |
Ensembl
integrin alpha 4 [Source:MGI Symbol;Acc:MGI:96603]
ENSMUSG00000027070ENSMUST00000080953Lrp212ReverseView as cDNA map |
View as Table
Internal |
Ensembl
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
ENSMUSG00000027080ENSMUST00000102645Med1912ForwardView as cDNA map |
View as Table
Internal |
Ensembl
mediator of RNA polymerase II transcription, subunit 19 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1914234]
ENSMUSG00000027099ENSMUST00000028511Mtx212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
metaxin 2 [Source:MGI Symbol;Acc:MGI:1859652]
ENSMUSG00000027107ENSMUST00000028515Chrna112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87885]
ENSMUSG00000027111ENSMUST00000028522Itga612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
ENSMUSG00000027111ENSMUST00000112101Itga612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
ENSMUSG00000027111ENSMUST00000155249Itga612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
ENSMUSG00000027168ENSMUST00000037848Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000090391Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000090397Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111082Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111083Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111084Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111085Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111086Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000111087Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000156216Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027168ENSMUST00000167211Pax612ForwardView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
ENSMUSG00000027170ENSMUST00000028592Eif3m12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 3, subunit M [Source:MGI Symbol;Acc:MGI:1351744]
ENSMUSG00000027170ENSMUST00000111110Eif3m12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
eukaryotic translation initiation factor 3, subunit M [Source:MGI Symbol;Acc:MGI:1351744]
ENSMUSG00000027203ENSMUST00000051605Dut12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
deoxyuridine triphosphatase [Source:MGI Symbol;Acc:MGI:1346051]
ENSMUSG00000027203ENSMUST00000082122Dut12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
deoxyuridine triphosphatase [Source:MGI Symbol;Acc:MGI:1346051]
ENSMUSG00000027270ENSMUST000000575036330527O06Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 6330527O06 gene [Source:MGI Symbol;Acc:MGI:1923411]
ENSMUSG00000027293ENSMUST00000028755Ehd412ReverseView as cDNA map |
View as Table
Internal |
Ensembl
EH-domain containing 4 [Source:MGI Symbol;Acc:MGI:1919619]
ENSMUSG00000027338ENSMUST00000110169Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027338ENSMUST00000110170Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027338ENSMUST00000110171Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027338ENSMUST00000110172Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027338ENSMUST00000124100Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027338ENSMUST00000136783Prnd12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prion protein dublet [Source:MGI Symbol;Acc:MGI:1346999]
ENSMUSG00000027366ENSMUST000000288442010106G01Rik12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 2010106G01 gene [Source:MGI Symbol;Acc:MGI:1913802]
Please email us for questions and/or suggestions
GUI created by the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University
We gratefully acknowledge support of this work by the William M. Keck Foundation