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Genome: Mus Musculus | mRNA | miRBase 18 (Nov. 2011), ENSEMBL 65 (Dec. 2011) and RNA22v2.0
Description: List of transcripts that are targeted by all of the below miRNA identifiers simultaneously
miRNA's: mmu-miR-98-3p (MIMAT0017023)
Filtering By: Base pair min value: 12 | Folding energy max value (Kcal/mol): -12 | Min miRNA targets: 1 | Max p-value: .1


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Gene IDTranscript IDCommon Gene Name# of miRNA targets
for specified miRNAs
ChromosomeStrand DirectionTranscript Link to view miRNA target predictionsGene LinkDescription
ENSMUSG00000004872ENSMUST00000004994Pax311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 3 [Source:MGI Symbol;Acc:MGI:97487]
ENSMUSG00000004872ENSMUST00000087086Pax311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
paired box gene 3 [Source:MGI Symbol;Acc:MGI:97487]
ENSMUSG00000006301ENSMUST00000113796Tmbim111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
transmembrane BAX inhibitor motif containing 1 [Source:MGI Symbol;Acc:MGI:1916910]
ENSMUSG00000006403ENSMUST00000006570Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111314Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000006403ENSMUST00000111315Adamts411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 [Source:MGI Symbol;Acc:MGI:1339949]
ENSMUSG00000009905ENSMUST00000010049Kdsr11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
3-ketodihydrosphingosine reductase [Source:MGI Symbol;Acc:MGI:1918000]
ENSMUSG00000015843ENSMUST00000015987Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111380Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111384Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000015843ENSMUST00000111386Rxrg11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
retinoid X receptor gamma [Source:MGI Symbol;Acc:MGI:98216]
ENSMUSG00000016918ENSMUST00000088585Sulf111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
sulfatase 1 [Source:MGI Symbol;Acc:MGI:2138563]
ENSMUSG00000018199ENSMUST00000159879Trove211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
TROVE domain family, member 2 [Source:MGI Symbol;Acc:MGI:106652]
ENSMUSG00000019699ENSMUST00000111159Akt311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thymoma viral proto-oncogene 3 [Source:MGI Symbol;Acc:MGI:1345147]
ENSMUSG00000019699ENSMUST00000111160Akt311ReverseView as cDNA map |
View as Table
Internal |
Ensembl
thymoma viral proto-oncogene 3 [Source:MGI Symbol;Acc:MGI:1345147]
ENSMUSG00000025962ENSMUST00000027103Fastkd211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
FAST kinase domains 2 [Source:MGI Symbol;Acc:MGI:1922869]
ENSMUSG00000025969ENSMUST00000027112Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000025969ENSMUST00000114155Nrp211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuropilin 2 [Source:MGI Symbol;Acc:MGI:1100492]
ENSMUSG00000026077ENSMUST00000056815Npas211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
neuronal PAS domain protein 2 [Source:MGI Symbol;Acc:MGI:109232]
ENSMUSG00000026112ENSMUST000000272866330578E17Rik11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA 6330578E17 gene [Source:MGI Symbol;Acc:MGI:1923428]
ENSMUSG00000026209ENSMUST00000171858Dnpep11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
aspartyl aminopeptidase [Source:MGI Symbol;Acc:MGI:1278328]
ENSMUSG00000026238ENSMUST00000045897Ptma11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
ENSMUSG00000026240ENSMUST00000027446Cops7b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349388]
ENSMUSG00000026240ENSMUST00000121534Cops7b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana) [Source:MGI Symbol;Acc:MGI:1349388]
ENSMUSG00000026249ENSMUST00000027467Serpine211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
serine (or cysteine) peptidase inhibitor, clade E, member 2 [Source:MGI Symbol;Acc:MGI:101780]
ENSMUSG00000026276ENSMUST00000027495Sept211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
septin 2 [Source:MGI Symbol;Acc:MGI:97298]
ENSMUSG00000026276ENSMUST00000168776Sept211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
septin 2 [Source:MGI Symbol;Acc:MGI:97298]
ENSMUSG00000026313ENSMUST00000008995Hdac411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
histone deacetylase 4 [Source:MGI Symbol;Acc:MGI:3036234]
ENSMUSG00000026333ENSMUST00000112844Gin111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
gypsy retrotransposon integrase 1 [Source:MGI Symbol;Acc:MGI:2182036]
ENSMUSG00000026349ENSMUST00000027587Ccnt221ForwardView as cDNA map |
View as Table
Internal |
Ensembl
cyclin T2 [Source:MGI Symbol;Acc:MGI:1920199]
ENSMUSG00000026407ENSMUST00000112068Cacna1s11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, L type, alpha 1S subunit [Source:MGI Symbol;Acc:MGI:88294]
ENSMUSG00000026452ENSMUST00000121990Syt211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
synaptotagmin II [Source:MGI Symbol;Acc:MGI:99666]
ENSMUSG00000026458ENSMUST00000168515Ppfia411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 [Source:MGI Symbol;Acc:MGI:1915757]
ENSMUSG00000026463ENSMUST00000143567Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
ENSMUSG00000026463ENSMUST00000165602Atp2b411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
ATPase, Ca++ transporting, plasma membrane 4 [Source:MGI Symbol;Acc:MGI:88111]
ENSMUSG00000026554ENSMUST00000074144Dcaf811ForwardView as cDNA map |
View as Table
Internal |
Ensembl
DDB1 and CUL4 associated factor 8 [Source:MGI Symbol;Acc:MGI:91860]
ENSMUSG00000026566ENSMUST00000111435Mpzl111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
myelin protein zero-like 1 [Source:MGI Symbol;Acc:MGI:1915731]
ENSMUSG00000026589ENSMUST00000027881Sec16b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
ENSMUSG00000026589ENSMUST00000086130Sec16b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
ENSMUSG00000026589ENSMUST00000111700Sec16b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
ENSMUSG00000026616ENSMUST00000082321Cr211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
ENSMUSG00000026623ENSMUST00000110855Lpgat111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
lysophosphatidylglycerol acyltransferase 1 [Source:MGI Symbol;Acc:MGI:2446186]
ENSMUSG00000026698ENSMUST00000028021Pigc11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
ENSMUSG00000026698ENSMUST00000111594Pigc11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
ENSMUSG00000026701ENSMUST00000071718Prdx611ReverseView as cDNA map |
View as Table
Internal |
Ensembl
peroxiredoxin 6 [Source:MGI Symbol;Acc:MGI:894320]
ENSMUSG00000033257ENSMUST00000042125Ttll411ForwardView as cDNA map |
View as Table
Internal |
Ensembl
tubulin tyrosine ligase-like family, member 4 [Source:MGI Symbol;Acc:MGI:1914784]
ENSMUSG00000034353ENSMUST00000097648Ramp111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
receptor (calcitonin) activity modifying protein 1 [Source:MGI Symbol;Acc:MGI:1858418]
ENSMUSG00000037470ENSMUST00000046875Uggt111ReverseView as cDNA map |
View as Table
Internal |
Ensembl
UDP-glucose glycoprotein glucosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2443162]
ENSMUSG00000037568ENSMUST00000047409Vash211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
vasohibin 2 [Source:MGI Symbol;Acc:MGI:2444826]
ENSMUSG00000037860ENSMUST00000147604Aim211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
absent in melanoma 2 [Source:MGI Symbol;Acc:MGI:2686159]
ENSMUSG00000037860ENSMUST00000166137Aim211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
absent in melanoma 2 [Source:MGI Symbol;Acc:MGI:2686159]
ENSMUSG00000037995ENSMUST00000052629Igsf911ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin superfamily, member 9 [Source:MGI Symbol;Acc:MGI:2135283]
ENSMUSG00000037995ENSMUST00000111235Igsf911ForwardView as cDNA map |
View as Table
Internal |
Ensembl
immunoglobulin superfamily, member 9 [Source:MGI Symbol;Acc:MGI:2135283]
ENSMUSG00000040596ENSMUST00000111411Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040596ENSMUST00000128861Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040596ENSMUST00000131487Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000040596ENSMUST00000169324Pogk11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
pogo transposable element with KRAB domain [Source:MGI Symbol;Acc:MGI:1918842]
ENSMUSG00000041426ENSMUST00000044478Hibch11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
3-hydroxyisobutyryl-Coenzyme A hydrolase [Source:MGI Symbol;Acc:MGI:1923792]
ENSMUSG00000042772ENSMUST00000073441Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000042772ENSMUST00000111836Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000042772ENSMUST00000164030Smg711ReverseView as cDNA map |
View as Table
Internal |
Ensembl
Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:MGI Symbol;Acc:MGI:2682334]
ENSMUSG00000050967ENSMUST00000053355Creg211ReverseView as cDNA map |
View as Table
Internal |
Ensembl
cellular repressor of E1A-stimulated genes 2 [Source:MGI Symbol;Acc:MGI:1928333]
ENSMUSG00000052062ENSMUST00000075374Pard3b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
par-3 partitioning defective 3 homolog B (C. elegans) [Source:MGI Symbol;Acc:MGI:1919301]
ENSMUSG00000052062ENSMUST00000094906Pard3b11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
par-3 partitioning defective 3 homolog B (C. elegans) [Source:MGI Symbol;Acc:MGI:1919301]
ENSMUSG00000053640ENSMUST00000066196Gm991511ForwardView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 9915 [Source:MGI Symbol;Acc:MGI:3641924]
ENSMUSG00000055322ENSMUST00000169786Tns121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
tensin 1 [Source:MGI Symbol;Acc:MGI:104552]
ENSMUSG00000055322ENSMUST00000171899Tns121ReverseView as cDNA map |
View as Table
Internal |
Ensembl
tensin 1 [Source:MGI Symbol;Acc:MGI:104552]
ENSMUSG00000055567ENSMUST00000061620Unc8021ForwardView as cDNA map |
View as Table
Internal |
Ensembl
unc-80 homolog (C. elegans) [Source:MGI Symbol;Acc:MGI:2652882]
ENSMUSG00000056211ENSMUST00000036288R3hdm111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
R3H domain 1 (binds single-stranded nucleic acids) [Source:MGI Symbol;Acc:MGI:2448514]
ENSMUSG00000056211ENSMUST00000097596R3hdm111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
R3H domain 1 (binds single-stranded nucleic acids) [Source:MGI Symbol;Acc:MGI:2448514]
ENSMUSG00000058248ENSMUST00000078470Kcnh111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
ENSMUSG00000058248ENSMUST00000110844Kcnh111ForwardView as cDNA map |
View as Table
Internal |
Ensembl
potassium voltage-gated channel, subfamily H (eag-related), member 1 [Source:MGI Symbol;Acc:MGI:1341721]
ENSMUSG00000059149ENSMUST00000126927Mfsd411ReverseView as cDNA map |
View as Table
Internal |
Ensembl
major facilitator superfamily domain containing 4 [Source:MGI Symbol;Acc:MGI:2442786]
ENSMUSG00000062729ENSMUST00000073120Ppox11ReverseView as cDNA map |
View as Table
Internal |
Ensembl
protoporphyrinogen oxidase [Source:MGI Symbol;Acc:MGI:104968]
ENSMUSG00000070695ENSMUST00000043725Cntnap5a11ForwardView as cDNA map |
View as Table
Internal |
Ensembl
contactin associated protein-like 5A [Source:MGI Symbol;Acc:MGI:3643623]
ENSMUSG00000091476ENSMUST00000094273Gm1643211ForwardView as cDNA map |
View as Table
Internal |
Ensembl
predicted gene 16432 [Source:MGI Symbol;Acc:MGI:3645414]
ENSMUSG00000002546ENSMUST00000100194Golga212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
ENSMUSG00000002546ENSMUST00000113377Golga212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
ENSMUSG00000002546ENSMUST00000113386Golga212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
ENSMUSG00000002546ENSMUST00000170657Golga212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
ENSMUSG00000002550ENSMUST00000002625Uck112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
uridine-cytidine kinase 1 [Source:MGI Symbol;Acc:MGI:98904]
ENSMUSG00000002550ENSMUST00000113405Uck112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
uridine-cytidine kinase 1 [Source:MGI Symbol;Acc:MGI:98904]
ENSMUSG00000004085ENSMUST00000135469B230120H23Rik12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
RIKEN cDNA B230120H23 gene [Source:MGI Symbol;Acc:MGI:2443258]
ENSMUSG00000004113ENSMUST00000070864Cacna1b12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:MGI Symbol;Acc:MGI:88296]
ENSMUSG00000004113ENSMUST00000102939Cacna1b12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
calcium channel, voltage-dependent, N type, alpha 1B subunit [Source:MGI Symbol;Acc:MGI:88296]
ENSMUSG00000005089ENSMUST00000080210Slc1a212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
ENSMUSG00000005089ENSMUST00000111211Slc1a212ForwardView as cDNA map |
View as Table
Internal |
Ensembl
solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
ENSMUSG00000006800ENSMUST00000088086Sulf212ReverseView as cDNA map |
View as Table
Internal |
Ensembl
sulfatase 2 [Source:MGI Symbol;Acc:MGI:1919293]
ENSMUSG00000006800ENSMUST00000109249Sulf212ReverseView as cDNA map |
View as Table
Internal |
Ensembl
sulfatase 2 [Source:MGI Symbol;Acc:MGI:1919293]
ENSMUSG00000007659ENSMUST00000007803Bcl2l112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
BCL2-like 1 [Source:MGI Symbol;Acc:MGI:88139]
ENSMUSG00000007659ENSMUST00000109820Bcl2l112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
BCL2-like 1 [Source:MGI Symbol;Acc:MGI:88139]
ENSMUSG00000016253ENSMUST00000016397Th1l12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
TH1-like homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1926424]
ENSMUSG00000016253ENSMUST00000109075Th1l12ForwardView as cDNA map |
View as Table
Internal |
Ensembl
TH1-like homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1926424]
ENSMUSG00000026740ENSMUST00000166495Dnajc112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:MGI Symbol;Acc:MGI:103268]
ENSMUSG00000026837ENSMUST00000028280Col5a112ForwardView as cDNA map |
View as Table
Internal |
Ensembl
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
ENSMUSG00000026867ENSMUST00000028224Gapvd112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
ENSMUSG00000026867ENSMUST00000102800Gapvd112ReverseView as cDNA map |
View as Table
Internal |
Ensembl
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
ENSMUSG00000026979ENSMUST00000056641Psd412ForwardView as cDNA map |
View as Table
Internal |
Ensembl
pleckstrin and Sec7 domain containing 4 [Source:MGI Symbol;Acc:MGI:2674093]
ENSMUSG00000026979ENSMUST00000102942Psd412ForwardView as cDNA map |
View as Table
Internal |
Ensembl
pleckstrin and Sec7 domain containing 4 [Source:MGI Symbol;Acc:MGI:2674093]
ENSMUSG00000027016ENSMUST00000111830Zfp385b12ReverseView as cDNA map |
View as Table
Internal |
Ensembl
zinc finger protein 385B [Source:MGI Symbol;Acc:MGI:2444734]
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We gratefully acknowledge support of this work by the William M. Keck Foundation