Off-Spotter

returned 4947 results

for hg19, NAG, seed --------------------, 5 maximum mismatches, and annotations on

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Number of results per 20mer

# of occurences20mer# of results per # of mismatches
4947CATCATCAAAGACCAAAAGT
01
11
210
339
4491
54405

Results per 20mer

4947 results for CATCATCAAAGACCAAAAGT

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ChromStrandStartEndGiven queryActual genomic hitNumber of mismatches Pre-mRNA (Unspliced)mRNA (5UTR)mRNA (CDS)mRNA (3UTR)lincRNA (Unspliced)lincRNA (Spliced) GC content External links
12+2891403128914053CATCATCAAAGACCAAAAGTCATCATCAAAGACCAAAAGT-AAG0------35.0%UCSC Genome Browser
12-7865107678651098CATCATCAAAGACCAAAAGTCATCATCAAAGACCAAAAGg-TAG1------40.0%UCSC Genome Browser
2+102188948102188970CATCATCAAAGACCAAAAGTCgTCATCAAAGACCAAgAGT-GAG2------45.0%UCSC Genome Browser
14+4264110842641130CATCATCAAAGACCAAAAGTCAaCATCAAAGACCAAAgGT-AAG2------40.0%UCSC Genome Browser
X+137054128137054150CATCATCAAAGACCAAAAGTCAaCATCAAAGACCAAAgGT-AAG2------40.0%UCSC Genome Browser
1+157286051157286073CATCATCAAAGACCAAAAGTCAaCATCAAAGACCAAAAGg-TAG2------40.0%UCSC Genome Browser
X+8024555880245580CATCATCAAAGACCAAAAGTCATCATCAAgaACCAAAAGT-CAG2------35.0%UCSC Genome Browser
3-180221073180221095CATCATCAAAGACCAAAAGTCATCATCAAAGACCccAAGT-AAG2------45.0%UCSC Genome Browser
X+2777766527777687CATCATCAAAGACCAAAAGTCATCATCAAAGACCcAAAGg-TAG2------45.0%UCSC Genome Browser
1-213661263213661285CATCATCAAAGACCAAAAGTCATCATCAAAGACCAAtAGc-CAG2------40.0%UCSC Genome Browser
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We gratefully acknowledge support of this work by the William M. Keck Foundation.
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