CLIPSim-MC tool for identifying miRNA targets from CLIP-seq data
Related links: RNA22 version 2.0 access (
custom sequences
|
precomputed sequences
)
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requests to date
Please cite:
"
Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types
", Peter M. Clark, Phillipe Loher, Kevin Quann, Jonathan Brody, Eric R. Londin and Isidore Rigoutsos (Scientific Reports 4, Article number: 5947)
Select Genome/Assembly:
Required Selection
Human (GRCh37), miRBase 20
Mouse (NCBIM37), miRBase 18
Select Chromosome:
Select Genome/Assembly first
Select MicroRNA:
Select Genome/Assembly first
Note: only chromosomes/miRNAs in which we have predictions for in the genome/assembly are listed
We gratefully acknowledge support of this work by the
William M. Keck Foundation
, the
Hirshberg Foundation for Pancreatic Cancer Research
, and the
Pennsylvania Department of Health
.
Please
email us
for questions and/or suggestions - GUI created by the
Computational Medicine Center
at the Sidney Kimmel Medical College of Thomas Jefferson University