MINTbase v2.0: a database for the interactive exploration of mitochondrial and nuclear tRNA fragments (tRFs)
Datasets included in MINTbase
BACK to help indexThe table below contains all studies of the primary data included in MINTbase.
| Coresponding Author's Name (Data Deposition) | Coresponding Author's Institution (Data Deposition) | Publication (Data Deposition) | Submission Date | Description |
|---|---|---|---|---|
| M. Friedlaender | MDC, Berlin-Buch | 21911355 | 2017-10-25 | microRNAs (miRNAs) are a large class of small non-coding RNAs which post-transcriptionally regulate the expression of a large fraction of all animal genes and are important in a wide range of biological processes. Recent advances in high-throughput sequencing allow miRNA detection at unprecedented sensitivity, but the computational task of accurately identifying the miRNAs in the background of sequenced RNAs remains challenging. |
| S. Srinivasan | UCSD | Cell 177, 446?462 | 2019-03-14 | Exosomes isolated from Serum Exosomes |
| T. The Cancer Genome Atlas Research Network | National Institutes of Health (NCI and NHGRI) | Initial TCGA publication | 2016-04-28 | TCGA Dataset (Primary solid Tumor) in project SARC (Sarcoma). The primary dataset was downloaded on 16Oct2015 and the clinical meta data is from 28Oct2015. |
| - | - | PMID: 19850906 | 2016-03-11 | Small RNA-seq |
| - | - | PMID: 24037378 | 2016-03-11 | Small RNA-seq |
| P. Kabos | Dept of Medicine, University of Colorado | PMID: 24906430 | 2016-03-11 | High-throughput sequencing of RNA isolated by crosslinking immunoprecipitation (HITS-CLIP) of Argonaute (Ago) protein |
| Y. Kirino | Computational Medicine Center, Thomas Jefferson University | PMID: 26124144 | 2016-02-22 | SHOT-RNAs found by isolating library by cP-RNA-seq, followed by the gel-purification of 30-35 nt target size, so 5' tRNA-halves could be captured selectively. |
| P. Sethupathy | University of North Carolina at Chapel Hill | PMID: 26646011 | 2016-02-24 | Small RNA-seq |
We gratefully acknowledge support of this work by the William M. Keck Foundation.
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