This page describes the structure of the CLIPSim-MC files found here. To view these predictions in our CLIPSim-MC tool click here.
Suppose that you have the following line
HSA HPNE rep01 hsa_miR_185_5p [CT]T.[CT]T[CT][CT] CTACTCT MRE_Bulge_Wobble X + 108297728 108297752 -8.000000 0.000001952016 0.000613158279
Then, each line represents a predicted heteroduplex.
- Column 1: species (e.g. HSA is human and MMU is mouse)
- Column 2: tissue
- Column 3: replicate
- Column 4: miRNA
- Column 5: architecture
- Column 6: MRE motif
- Column 7: architecture description
- Column 8: MRE chromosome
- Column 9: MRE strand
- Column 10: MRE start coordinate
- Column 11: MRE end coordinate
- Column 12: gibbs binding free energy
- Column 13: p-Value
- Column 14: FDR