If you use any of the below please cite: E.R. Londin, P. Loher, et al. “Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs” PNAS, DOI 10.1073/pnas.1420955112, 2015
|1. Visualize the novel miRNAs on the UCSC human genome browser (GRCh37/hg19). A UCSC track hub is used which allows you to view the novel matures within a UCSC track.|
|2. Click the button below to browse compressed files containing: a) an image of the predicted miRNA precursor’s 2ndary structure in PDF format, and, b) a list of mRNA targets predicted by RNA22 (v2) in plain text.|
|3. Download the mature coordinates in BED format (GRCh37)|
|4. Download the mature and precursor sequences and coordinates in MS Excel format (GRCh37)|
- Londin, E, Loher, P, Telonis, AG, Quann, K, Clark, P, Jing, Y, Hatzimichael, E, Kirino, Y, Honda, S, Lally, M, Ramratnam, B, Comstock, CE, Knudsen, KE, Gomella, L, Spaeth, GL, Hark, L, Katz, LJ, Witkiewicz, A, Rostami, A, Jimenez, SA, Hollingsworth, MA, Yeh, JJ, Shaw, CA, McKenzie, SE, Bray, P, Nelson, PT, Zupo, S, Van Roosbroeck, K, Keating, MJ, Calin, GA, Yeo, C, Jimbo, M, Cozzitorto, J, Brody, JR, Delgrosso, K, Mattick, JS, Fortina, P, Rigoutsos, I. Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. Proc. Natl. Acad. Sci. U.S.A. 2015;112 (10):E1106-15. doi: 10.1073/pnas.1420955112. PubMed PMID:25713380 PubMed Central PMC4364231.
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