tRNA fragments 2015

Please cite:
  • Telonis, AG, Loher, P, Honda, S, Jing, Y, Palazzo, J, Kirino, Y, Rigoutsos, I. Dissecting tRNA-derived fragment complexities using personalized transcriptomes reveals novel fragment classes and unexpected dependencies. Oncotarget. 2015;6 (28):24797-822. doi: 10.18632/oncotarget.4695. PubMed PMID:26325506 PubMed Central PMC4694795.
  • The following links below allow you to download the data matrices used for the analysis in the paper:

    1. LCL (Lymphoblastoid cell line) dataset, comprised from 482 samples originating from subjects from 5 different populations (CEU, FIN, GBR, TSI, YRI), originally described in [2]. Click the button below to download.
      429 Downloads

    2. BRCA (Breast Cancer) dataset, comprised from 311 samples (16 normal and 294 tumor), originally described in [3]. Click the button below to download.
      364 Downloads

    3. Argonaute HITS-CLIP-seq dataset from 3 breast cancer model cell lines, each one analyzed in triplicate, originally described in [4]. Click the button below to download.
      356 Downloads

    References

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