Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional?

The tRNA-lookalikes for human as well as more information on the identification of tRNA-lookalikes can be found here.

If you use any of the below please cite: Telonis AG, Kirino Y, Rigoutsos I (2015) Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional? RNA Biology 12(4):375-380

In the paper “Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional?”¹ we discuss the possible functional roles of tRNA-lookalikes in the nuclear chromosomes. We also track the evolutionary history of the mitochondrial tRNA-lookalikes in nuclear chromosomes in 10 different species. The analysis was performed the same way as in our previous study², which can also be found here. The data can be downloaded by the following buttons:

All species .txt file 1102 Downloads

All species .xlsx file 1153 Downloads

Chimpanzee (Pan troglodytes) 1007 Downloads	Gorilla (Gorilla gorilla) 978 Downloads	Macaca (Macaca mulatta) 1189 Downloads	Squirrel Monkey (Monkey Saimiri) 939 Downloads	Mouse (Mus musculus) 995 Downloads
Rat (Rattus norvegicus) 936 Downloads	Opossum (Monodelphis domestica) 912 Downloads	Drosophila (Drosophila melanogaster) 869 Downloads	Worm (Caenorhabditis elegans) 884 Downloads	Sponge (Amphimedon queenslandica) 941 Downloads

File structure

For each organism, the list of tRNA-lookalikes is in tab-delimeted format. The columns are as follows:

• Column 1: Chromosome or scaffold
• Column 2: Strand
• Column 3: Start coordinate of the tRNA-lookalike, inclusive
• Column 4: End coordinate of the tRNA-lookalike, inclusive
• Column 5: Best-matched mitochondrial tRNA coordinates
• Column 6: Information about the mitochondrial tRNA (e.g. amino acid encoded)
• Column 7: Percentage identity of the best-matched tRNA sequence with the genomic sequence of the tRNA-lookalike
• Column 8: Number of mismatches between the sequence of the best-matched tRNA and the sequence of the tRNA-lookalike

References

1. Telonis AG, Kirino Y, Rigoutsos I (2015) Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional? RNA Biology 12(4):375-380
2. Telonis AG, Loher P, Kirino Y, Rigoutsos I (2014) Nuclear and mitochondrial tRNA-lookalikes in the human genome. Frontiers in Genetics doi: 10.3389/fgene.2014.00344

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We gratefully acknowledge support of this work by the William M. Keck Foundation.