If you use any of the below please cite: Miranda, KC et al (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes Cell, 126, 1203-1217, 10.1016/j.cell.2006.07.031 (click here to download paper)
Interactive Predictions: RNA22 version 2.0 (type in any sequence you want)
Note: if you downloaded the Java-app prior to April 9th, 2015 it will no longer work and you’ll need to redownload
Pre-computed Predictions: RNA22 versions 1.0 and 2.0 (access pre-computed rna22 target predictions for multiple species)
Note: The RNA22v1.0 and RNA22v2.0 apps have been combined in this new app
Full sets of Preditions: The RNA22 full dataset predictions for several species can be downloaded here.
Note: New predictions for human mRNA, lincRNA and lncRNA have been added