RNA22

If you use any of the below please cite: Miranda, KC et al (2006) A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes Cell, 126, 1203-1217, 10.1016/j.cell.2006.07.031 (click here to download paper)

 

Interactive Predictions: RNA22 version 2.0 (type in any sequence you want)
http://cm.jefferson.edu/rna22/Interactive/
Note: If you click the link above you’ll also be able to download a program that runs locally on your machine allowing you to submit batch queries to us

Pre-computed Predictions: RNA22 versions 1.0 and 2.0 (access pre-computed rna22 target predictions for multiple species)
http://cm.jefferson.edu/rna22/Precomputed/
Note: The RNA22v1.0 and RNA22v2.0 apps have been combined in this new app

Full sets of Preditions: The RNA22 full dataset predictions for several species can be downloaded here.
https://cm.jefferson.edu/data-tools-downloads/rna22-full-sets-of-predictions/
Note: New predictions for human mRNA, lincRNA and lncRNA have been added

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