MINTcodes

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Package Description Download
MINTplates1 Java resource and source code for the encoding and decoding of “tRF license-plates” which are labels that transcend assemblies and species. They depend solely on the tRF’s genomic sequence and are based on encoding techniques to achieve smaller length and concrete format. Version: 0.2 (3/16/2016)
MINTmap2 Program, source code, and lookup table which can be used to generate tRF profiles from short RNA-Seq datasets. MINTmap is available under the open source GNU GPL v3.0 license. Read more. Version: 1.0 (2/21/2017)

References

  1. Pliatsika, V, Loher, P, Telonis, AG, Rigoutsos, I. MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments. Bioinformatics. 2016;32 (16):2481-9. doi: 10.1093/bioinformatics/btw194. PubMed PMID:27153631 PubMed Central PMC4978933.

  2. Loher, P, Telonis, AG, Rigoutsos, I. MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data. Sci Rep. 2017;7 :41184. doi: 10.1038/srep41184. PubMed PMID:28220888 PubMed Central PMC5318995.

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