Data

From this page you can access various datasets that have been generated by our center.

  1. tRNA-derived fragments (2015): novel categories and dependencies *NEW* Data matrices for the tRNA-derived fragment profiles of 482 lymphoblastoid cell lines and 311 breast normal and cancer tissue datasets as described in this publication.
  2. Mitochondrial tRNA-lookalikes in nuclear chromosomes: Could they be functional? *NEW* Lists of tRNA-lookalikes in 10 animal species as described in this publication.
  3. novel miRNA 2015 *NEW* Coordinates, sequences, and RNA22 predictions for all identified novel miRNAs as described in this publication.
  4. RNA22 full sets of predictions *UPDATED* Bundle download of the data sets accessible from our RNA22 v2-based microRNA target predictions and RNA22-based microRNA target predictions acquired with RNA22 described in this publication.
  5. Nuclear and mitochondrial tRNA-lookalikes in the human genomes List of tRNA-Lookalikes and known tRNA genes in the human genome as described in this publication.
  6. CLIPSim-MC 2014 Interactive access to the clip prediction data described in this publication.
  7. Platelets 2014 Interactive access to the data described in this publication.
  8. Platelets 2012 Interactive access to the data described in this publication.
  9. Pyknons A list of human and mouse pyknons with standardized nomenclature and a complete list of their genomics coordinates as described in this publication.
  10. RNA22 v2-based microRNA target predictions This application provides access to RNA22 v1 and v2 predictions for all protein coding transcripts in human, mouse, roundworm, and fruit fly. It allows you to visualize the predictions within a cDNA map and also find transcripts where multiple miR’s of interest target. It uses the method described in this publication.
  11. Small RNA mouse datasets Next-gen datasets (gzipped tarball) mentioned in this publication.

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